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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 3
  • mitochondrion 2
  • endoplasmic reticulum 4
  • nucleus 1
  • extracellular 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY47077 Canola endoplasmic reticulum, plasma membrane 97.7 98.2
Bra003048.1-P Field mustard endoplasmic reticulum 81.59 80.35
Bra019030.1-P Field mustard endoplasmic reticulum, plasma membrane 75.45 75.26
AT5G53540.1 Thale cress endoplasmic reticulum 76.47 74.19
Bra026316.1-P Field mustard endoplasmic reticulum 73.4 73.21
Solyc03g082630.2.1 Tomato endoplasmic reticulum 68.03 70.56
KRH53570 Soybean endoplasmic reticulum, plasma membrane 70.08 69.9
PGSC0003DMT400047633 Potato endoplasmic reticulum 67.52 69.84
KRH64362 Soybean endoplasmic reticulum, plasma membrane 69.05 68.88
Solyc06g053160.2.1 Tomato endoplasmic reticulum, plasma membrane 68.8 68.62
PGSC0003DMT400013963 Potato endoplasmic reticulum 68.54 68.37
KRH15897 Soybean endoplasmic reticulum 67.52 67.69
TraesCS7D01G381400.1 Wheat endoplasmic reticulum 62.92 66.13
TraesCS7B01G287800.1 Wheat golgi 62.92 65.95
TraesCS7A01G384900.1 Wheat endoplasmic reticulum 62.66 65.68
KXG20883 Sorghum endoplasmic reticulum 65.47 65.47
GSMUA_Achr11P... Banana endoplasmic reticulum 64.71 65.21
Os06t0714500-01 Rice plasma membrane 65.22 64.89
HORVU0Hr1G021880.1 Barley endoplasmic reticulum 65.22 64.72
Zm00001d014775_P002 Maize plastid 64.71 64.71
GSMUA_Achr4P05220_001 Banana endoplasmic reticulum 63.43 63.92
HORVU7Hr1G091480.2 Barley plastid 63.68 57.64
Zm00001d036410_P002 Maize plastid 64.96 53.36
VIT_16s0098g01260.t01 Wine grape endoplasmic reticulum 67.26 34.07
Bra004917.1-P Field mustard cytosol 24.04 29.47
Bra005414.1-P Field mustard cytosol 26.6 26.53
Bra018640.1-P Field mustard cytosol 27.88 25.35
Bra012009.1-P Field mustard cytosol 27.62 24.94
Bra000503.1-P Field mustard cytosol 27.37 24.71
Bra039332.1-P Field mustard cytosol 24.3 21.74
Bra003561.1-P Field mustard cytosol 27.37 20.15
Bra008479.1-P Field mustard cytosol 26.85 19.89
Bra022979.1-P Field mustard plastid 27.37 18.54
Bra027756.1-P Field mustard endoplasmic reticulum 38.62 18.17
Bra003102.1-P Field mustard extracellular, plasma membrane 38.11 18.13
Bra029104.1-P Field mustard extracellular, plasma membrane 38.11 18.1
Bra024235.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 37.6 17.91
Bra032982.1-P Field mustard plastid 29.67 17.9
Bra026293.1-P Field mustard endoplasmic reticulum, extracellular 37.08 17.49
Bra038230.1-P Field mustard cytosol, mitochondrion, plastid 35.04 13.81
Bra014239.1-P Field mustard mitochondrion 35.04 13.71
Bra032579.1-P Field mustard plastid 38.36 13.08
Bra018548.1-P Field mustard plastid 39.39 12.63
Bra000878.1-P Field mustard plastid 39.9 12.46
Bra036265.1-P Field mustard plastid 40.15 12.17
Bra033356.1-P Field mustard cytosol, plastid 39.64 10.4
Protein Annotations
Gene3D:1.10.8.60Gene3D:3.40.50.300MapMan:35.1InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra029063EnsemblPlants:Bra029063.1EnsemblPlants:Bra029063.1-PGO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0016020GO:GO:0016021UniProt:M4EJU7InterPro:P-loop_NTPase
PFAM:PF00004ScanProsite:PS00674PANTHER:PTHR23074PANTHER:PTHR23074:SF20SMART:SM00382SUPFAM:SSF52540
TMHMM:TMhelixUniParc:UPI000253FF77SEG:seg:::
Description
AT5G53540 (E=5e-156) | MSP1 protein, putative / intramitochondrial sorting protein, putative
Coordinates
chrA03:+:6125737..6127696
Molecular Weight (calculated)
43670.8 Da
IEP (calculated)
9.193
GRAVY (calculated)
-0.234
Length
391 amino acids
Sequence
(BLAST)
001: MQRSSRKRDS SFLEQLILYV AGAALASLSL YFCARHSDPN REASDKALKR KRELAKRLDR PLIQTNQYED VIAGDVINSR KIDVEFDSIG GLESKKQSLY
101: ELVILPLKRP ELFAYGKLLG PQKGVLLYGP PGTGKTMLAK AIAKESGAVF INVRVSNLMS KWFSERGLTV YLSTVAAVFS LAEKLQPAIV FIDEVDSFLG
201: QRRSTGNEAM AIMKTEFMAL WDGVATDKNA RVMVLGATNR PSELDEAILR RFAQAFEIGM PDCKERAEIF RVVLKGERVE EGIDYDLVAR LCEDYTGSDI
301: FELCKKAAYL PIREILEEER KGRPVSVPRA LTQMDLEKVL ATSKKTQVAA SEYSGSRLQD SGWRRPKDSD NVQAVINGIS RLLVSGMINQ Q
Best Arabidopsis Sequence Match ( AT5G53540.1 )
(BLAST)
001: MKRSSGRKDS NFIEQLILYV ASAALSSLVL YVGLRQLDPN RDAAKKSLEH KREIAKRLGR PLIQTNQYED VIACDVINPL HIDVEFGSIG GLESIKQALY
101: ELVILPLKRP ELFAYGKLLG PQKGVLLYGP PGTGKTMLAK AIARESEAVF INVKVSNLMS KWFGDAQKLV SAVFSLAYKL QPAIIFIDEV DSFLGQRRST
201: DNEAMSNMKT EFMALWDGFT TDQNARVMVL AATNRPSELD EAILRRFPQS FEIGMPDCQE RAQILKVVLK GESVESDINY DRIARLCEDY TGSDIFELCK
301: KAAYFPIREI LEAEKEGKRV SVPRPLTQLD LEKVLATSKK TQVAASEYTG LSSQSSVWGS PSNADEVQAA INGISKLFVS QLRNIQPDSQ DSYQQHPSEG
401: DSE
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FJC9]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.