Factsheet for Bra018640.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93578	Canola	cytosol	99.77	99.77
CDX95077	Canola	cytosol	99.3	99.07
Bra012009.1-P	Field mustard	cytosol	93.72	93.07
Bra000503.1-P	Field mustard	cytosol	93.49	92.84
Os01t0141100-02	Rice	cytosol, plasma membrane	64.88	92.08
KRH30451	Soybean	cytosol	90.47	89.63
KRH25197	Soybean	cytosol	90.47	89.63
GSMUA_Achr4P24320_001	Banana	cytosol	84.65	89.22
VIT_06s0080g00160.t01	Wine grape	extracellular	89.77	89.15
KRH22691	Soybean	cytosol	84.65	89.0
KRH26619	Soybean	nucleus	90.23	88.99
EES00346	Sorghum	cytosol	90.23	88.99
Zm00001d039904_P006	Maize	cytosol	89.77	88.74
GSMUA_Achr2P22550_001	Banana	cytosol	84.88	88.59
GSMUA_Achr3P01430_001	Banana	cytosol	83.49	87.35
TraesCS3A01G054100.1	Wheat	cytosol	88.6	86.99
TraesCS3B01G065200.1	Wheat	cytosol	88.37	86.76
TraesCS3D01G053600.1	Wheat	cytosol	88.14	86.53
PGSC0003DMT400050194	Potato	cytosol	86.28	85.29
Solyc11g007170.1.1	Tomato	cytosol	80.0	85.15
Zm00001d008596_P005	Maize	cytosol	90.0	85.05
TraesCS6A01G133300.1	Wheat	cytosol	74.88	73.52
TraesCS6D01G122900.1	Wheat	cytosol	74.65	73.46
TraesCS6B01G161700.1	Wheat	cytosol	74.65	73.46
Os02t0159900-01	Rice	plasma membrane	73.49	72.98
Os01t0141300-00	Rice	cytosol	73.26	65.9
HORVU3Hr1G010300.1	Barley	cytosol, plastid	74.88	61.45
Bra004917.1-P	Field mustard	cytosol	28.84	38.87
Bra005414.1-P	Field mustard	cytosol	33.26	36.48
Bra008479.1-P	Field mustard	cytosol	37.21	30.3
Bra003561.1-P	Field mustard	cytosol	37.21	30.13
Bra039332.1-P	Field mustard	cytosol	30.23	29.75
Bra019030.1-P	Field mustard	endoplasmic reticulum, plasma membrane	25.58	28.06
Bra029063.1-P	Field mustard	endoplasmic reticulum	25.35	27.88
Bra026316.1-P	Field mustard	endoplasmic reticulum	25.35	27.81
Bra003048.1-P	Field mustard	endoplasmic reticulum	25.58	27.71
Bra022979.1-P	Field mustard	plastid	32.56	24.26
Bra032982.1-P	Field mustard	plastid	32.56	21.6
Bra027756.1-P	Field mustard	endoplasmic reticulum	30.0	15.52
Bra024235.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	28.6	14.98
Bra003102.1-P	Field mustard	extracellular, plasma membrane	28.37	14.84
Bra029104.1-P	Field mustard	extracellular, plasma membrane	28.37	14.82
Bra026293.1-P	Field mustard	endoplasmic reticulum, extracellular	28.37	14.72
Bra038230.1-P	Field mustard	cytosol, mitochondrion, plastid	30.7	13.31
Bra014239.1-P	Field mustard	mitochondrion	30.47	13.11
Bra032579.1-P	Field mustard	plastid	28.14	10.55
Bra018548.1-P	Field mustard	plastid	29.07	10.25
Bra000878.1-P	Field mustard	plastid	28.84	9.9
Bra036265.1-P	Field mustard	plastid	28.6	9.53
Bra033356.1-P	Field mustard	cytosol, plastid	29.3	8.45

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra018640	EnsemblPlants:Bra018640.1	EnsemblPlants:Bra018640.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	UniProt:M4DQ49	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF04212	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137
SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540	UniParc:UPI000253E721	InterPro:Vps4_C
SEG:seg	:	:	:	:	:

Description

AT2G27600 (E=1e-227) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding

Coordinates

chrA06:-:2855322..2857385

Molecular Weight (calculated)

48104.1 Da

IEP (calculated)

7.585

GRAVY (calculated)

-0.545

Length

430 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVKQAVQED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT KAKSKGKDGD
101: GEDKEQSKLR AGLDSAIVRE KPNVKWSDVA GLESAKQALQ EAVILPVKFP QFFTGKRRPW RAFLLYGPPG TGKSYLAKAV ATEADSTFFS VSSSDLVSKW
201: MGESEKLVSN LFEMARESAP SIIFVDEIDS LCGQRGEGNE SEASRRIKTE LLVQMQGVGH NDEKVLVLAA TNTPYALDQA IRRRFDKRIY IPLPDVKARQ
301: HMFKVHLGDT PHNLNESDFE YLARKTQGFS GSDVAVCVKD VLFEPVRKTQ DAMFFFKSAD GTWMPCGPKQ SGAIQITMQD LAEKGLAEKI IPPPISRTDF
401: EKVLARQRPT VSKSDLEVHE RFTKEFGEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.