Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22691 | Soybean | cytosol | 93.12 | 99.27 |
| KRH25197 | Soybean | cytosol | 93.35 | 93.78 |
| KRH30451 | Soybean | cytosol | 93.35 | 93.78 |
| VIT_06s0080g00160.t01 | Wine grape | extracellular | 92.66 | 93.3 |
| GSMUA_Achr4P24320_001 | Banana | cytosol | 86.93 | 92.89 |
| Os01t0141100-02 | Rice | cytosol, plasma membrane | 63.76 | 91.75 |
| CDY31186 | Canola | cytosol | 90.37 | 90.78 |
| GSMUA_Achr2P22550_001 | Banana | cytosol | 85.78 | 90.78 |
| AT2G27600.1 | Thale cress | cytosol | 90.37 | 90.57 |
| CDX83275 | Canola | cytosol | 89.91 | 90.53 |
| CDY04504 | Canola | cytosol | 89.68 | 90.51 |
| CDX93578 | Canola | cytosol | 89.22 | 90.47 |
| CDX71438 | Canola | cytosol | 88.99 | 90.44 |
| Bra000503.1-P | Field mustard | cytosol | 89.68 | 90.3 |
| Bra012009.1-P | Field mustard | cytosol | 89.68 | 90.3 |
| GSMUA_Achr3P01430_001 | Banana | cytosol | 85.09 | 90.27 |
| Bra018640.1-P | Field mustard | cytosol | 88.99 | 90.23 |
| EES00346 | Sorghum | cytosol | 90.14 | 90.14 |
| CDX95077 | Canola | cytosol | 88.76 | 89.79 |
| Zm00001d039904_P006 | Maize | cytosol | 89.22 | 89.43 |
| TraesCS3D01G053600.1 | Wheat | cytosol | 87.61 | 87.21 |
| TraesCS3A01G054100.1 | Wheat | cytosol | 87.61 | 87.21 |
| PGSC0003DMT400050194 | Potato | cytosol | 86.93 | 87.13 |
| TraesCS3B01G065200.1 | Wheat | cytosol | 87.39 | 86.99 |
| Solyc11g007170.1.1 | Tomato | cytosol | 80.5 | 86.88 |
| Zm00001d008596_P005 | Maize | cytosol | 89.22 | 85.49 |
| TraesCS6B01G161700.1 | Wheat | cytosol | 74.54 | 74.37 |
| TraesCS6A01G133300.1 | Wheat | cytosol | 74.54 | 74.2 |
| TraesCS6D01G122900.1 | Wheat | cytosol | 74.31 | 74.14 |
| Os02t0159900-01 | Rice | plasma membrane | 73.39 | 73.9 |
| Os01t0141300-00 | Rice | cytosol | 72.71 | 66.32 |
| HORVU3Hr1G010300.1 | Barley | cytosol, plastid | 74.31 | 61.83 |
| KRH23518 | Soybean | cytosol | 23.17 | 44.1 |
| KRH08796 | Soybean | cytosol | 15.6 | 39.08 |
| KRH58481 | Soybean | cytosol | 34.17 | 36.97 |
| KRH42362 | Soybean | cytosol, endoplasmic reticulum | 33.95 | 36.54 |
| KRH09800 | Soybean | cytosol | 35.09 | 32.01 |
| KRH00594 | Soybean | cytosol, plastid | 34.17 | 30.35 |
| KRH40573 | Soybean | cytosol, plastid | 33.72 | 30.25 |
| KRH47511 | Soybean | cytosol | 36.47 | 29.94 |
| KRH44395 | Soybean | cytosol | 36.47 | 29.83 |
| KRH53570 | Soybean | endoplasmic reticulum, plasma membrane | 26.38 | 29.34 |
| KRH64362 | Soybean | endoplasmic reticulum, plasma membrane | 26.38 | 29.34 |
| KRH15897 | Soybean | endoplasmic reticulum | 25.92 | 28.97 |
| KRH08789 | Soybean | cytosol | 21.79 | 28.36 |
| KRG94255 | Soybean | nucleus | 33.49 | 22.15 |
| KRH57680 | Soybean | nucleus | 33.26 | 22.0 |
| KRH57222 | Soybean | cytosol | 25.46 | 17.7 |
| KRH38312 | Soybean | endoplasmic reticulum | 29.36 | 15.67 |
| KRH08780 | Soybean | extracellular, plasma membrane | 29.13 | 15.54 |
| KRH27876 | Soybean | cytosol | 28.67 | 14.9 |
| KRH59989 | Soybean | endoplasmic reticulum | 28.67 | 14.88 |
| KRH77598 | Soybean | endoplasmic reticulum | 27.98 | 14.54 |
| KRG91604 | Soybean | endoplasmic reticulum, plasma membrane | 27.29 | 14.51 |
| KRH35220 | Soybean | endoplasmic reticulum | 26.61 | 14.34 |
| KRH41256 | Soybean | extracellular | 27.75 | 14.19 |
| KRH29161 | Soybean | cytosol, mitochondrion | 26.83 | 11.27 |
| KRH24190 | Soybean | mitochondrion | 26.83 | 11.26 |
| KRH71559 | Soybean | cytosol | 27.98 | 11.03 |
| KRH31896 | Soybean | nucleus | 28.44 | 10.11 |
| KRH31895 | Soybean | nucleus | 28.9 | 10.1 |
| KRH54195 | Soybean | plastid | 28.44 | 10.02 |
| KRH71560 | Soybean | nucleus | 28.44 | 9.98 |
| KRH63756 | Soybean | cytosol, plastid | 27.98 | 9.89 |
| KRH03951 | Soybean | nucleus | 27.52 | 9.8 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:1.20.58.280 | EntrezGene:100806836 | MapMan:22.5.4.4.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| EMBL:ACUP02007725 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlantsGene:GLYMA_12G183700 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0016787 | GO:GO:0016887 | UniProt:I1LTU5 | EnsemblPlants:KRH26619 | ProteinID:KRH26619 |
| ProteinID:KRH26619.1 | InterPro:MIT | InterPro:MIT_dom_sf | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF04212 |
| PFAM:PF09336 | ScanProsite:PS00674 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF137 | SMART:SM00382 | SMART:SM00745 |
| SUPFAM:SSF116846 | SUPFAM:SSF52540 | UniParc:UPI000233D747 | InterPro:Vps4_C | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr12:-:34470517..34477475
Molecular Weight (calculated)
48520.7 Da
IEP (calculated)
7.585
GRAVY (calculated)
-0.522
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSNFKEQAI EYVKQAVQED NAGNYAKAFP LYMNALEYFK THLKYEKNPK IKEAITQKFT EYLRRAEEIR AVLDDGGPGP ASNGDAAVAA RPKTKPKDGE
101: SGGGGDGEDP EQAKLRAGLN SAIIREKPNV KWNDVAGLES AKQALQEAVI LPVKFPQFFT GKRRPWRAFL LYGPPGTGKS YLAKAVATEA ESTFFSVSSS
201: DLVSKWMGES EKLVSNLFEM ARESAPSIIF IDEIDSLCGQ RGEGNESEAS RRIKTELLVQ MQGVGHNDQK VLVLAATNTP YALDQAIRRR FDKRIYIPLP
301: DLKARQHMFK VHLGDTPHNL TESDFEYLAS RTEGFSGSDI SVCVKDVLFE PVRKTQDAMF FLKNPEGMWI PCGPKQQGAV QTSMQELAAK GLASKILPPP
401: ITRTDFEKVL ARQRPTVSKA DLDVHERFTK EFGEEG
101: SGGGGDGEDP EQAKLRAGLN SAIIREKPNV KWNDVAGLES AKQALQEAVI LPVKFPQFFT GKRRPWRAFL LYGPPGTGKS YLAKAVATEA ESTFFSVSSS
201: DLVSKWMGES EKLVSNLFEM ARESAPSIIF IDEIDSLCGQ RGEGNESEAS RRIKTELLVQ MQGVGHNDQK VLVLAATNTP YALDQAIRRR FDKRIYIPLP
301: DLKARQHMFK VHLGDTPHNL TESDFEYLAS RTEGFSGSDI SVCVKDVLFE PVRKTQDAMF FLKNPEGMWI PCGPKQQGAV QTSMQELAAK GLASKILPPP
401: ITRTDFEKVL ARQRPTVSKA DLDVHERFTK EFGEEG
001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
Arabidopsis Description
SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.