Factsheet for Os01t0141300-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0151900-01
Os03t0666500-01
Os06t0308800-01
Os10t0441800-01
Os12t0631100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	Os03t0151900-01	AT3G54840.1	17468262
AT2G27600.1	Os10t0441800-01	AT3G54840.1	17468262
AT2G27600.1	Os03t0666500-01	AT4G19640.1	17468262
AT2G27600.1	Os12t0631100-01	AT4G19640.1	17468262
AT2G27600.1	Os06t0308800-01	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0141100-02	Rice	cytosol, plasma membrane	50.63	79.87
GSMUA_Achr4P24320_001	Banana	cytosol	66.11	77.45
GSMUA_Achr2P22550_001	Banana	cytosol	66.74	77.43
EES00346	Sorghum	cytosol	70.08	76.83
Zm00001d039904_P006	Maize	cytosol	69.67	76.55
GSMUA_Achr3P01430_001	Banana	cytosol	65.48	76.16
TraesCS3D01G053600.1	Wheat	cytosol	68.2	74.43
TraesCS3A01G054100.1	Wheat	cytosol	67.99	74.2
TraesCS3B01G065200.1	Wheat	cytosol	67.78	73.97
CDX71438	Canola	cytosol	66.11	73.66
CDX93578	Canola	cytosol	66.11	73.49
Zm00001d008596_P005	Maize	cytosol	69.87	73.41
Bra018640.1-P	Field mustard	cytosol	65.9	73.26
CDX95077	Canola	cytosol	65.9	73.09
CDY04504	Canola	cytosol	65.9	72.92
Bra012009.1-P	Field mustard	cytosol	65.9	72.75
CDX83275	Canola	cytosol	65.9	72.75
KRH26619	Soybean	nucleus	66.32	72.71
CDY31186	Canola	cytosol	65.9	72.58
KRH25197	Soybean	cytosol	65.9	72.58
KRH30451	Soybean	cytosol	65.9	72.58
Bra000503.1-P	Field mustard	cytosol	65.69	72.52
VIT_13s0106g00490.t01	Wine grape	cytosol	65.48	72.12
KRH22691	Soybean	cytosol	61.51	71.88
AT2G27600.1	Thale cress	cytosol	65.27	71.72
PGSC0003DMT400050194	Potato	cytosol	65.27	71.72
Solyc11g007170.1.1	Tomato	cytosol	59.83	70.79
Os02t0159900-01	Rice	plasma membrane	58.79	64.9
HORVU3Hr1G010300.1	Barley	cytosol, plastid	56.28	51.34
Os01t0757400-02	Rice	cytosol	29.92	37.05
Os01t0673500-01	Rice	cytosol	30.33	35.37
Os02t0749150-01	Rice	mitochondrion	19.46	34.7
Os11t0661400-01	Rice	cytosol	15.9	31.54
Os06t0225900-01	Rice	cytosol	22.59	29.43
Os06t0130000-02	Rice	cytosol	29.08	28.54
Os01t0683100-01	Rice	extracellular	30.96	28.52
Os06t0714500-01	Rice	plasma membrane	20.5	24.94
Os01t0623500-01	Rice	cytosol	25.1	14.78
Os01t0226400-01	Rice	plasma membrane	24.9	14.17
Os03t0344700-01	Rice	cytosol	22.8	14.06
Os05t0584600-02	Rice	vacuole	23.01	12.87
Os07t0672500-02	Rice	cytosol, plastid	22.8	10.08
Os12t0443800-01	Rice	nucleus	3.14	3.93

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:107275709	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	ProteinID:BAD61062.1	ProteinID:BAS70321.1	ProteinID:EEE53841.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0016787	GO:GO:0016887	InterPro:MIT	InterPro:MIT_dom_sf	EnsemblPlantsGene:Os01g0141300
EnsemblPlants:Os01t0141300-00	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212	PFAM:PF09336	PANTHER:PTHR23074
PANTHER:PTHR23074:SF137	UniProt:Q5ZEN9	SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540
UniParc:UPI0000450437	InterPro:Vps4_C	RefSeq:XP_015642485.1	SEG:seg	:	:

Description

Similar to vacuolar sorting protein 4b. (Os01t0141300-00)

Coordinates

chr1:-:2226409..2229526

Molecular Weight (calculated)

53556.0 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.400

Length

478 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVKQAVQED NGGNYVKAFP LYMNALEYFK THLKYEKDPK IKDAIAAKFT EYLRRAEEIR AVLDGHIGGG GGGGDSEQAK PRGMLRSAIV
101: AAKPSVKWSD VAGLESAKEA LQEAAILPIK FPHFFTGKRS PWKAFLLYGP PGTGKSYLAE AVATEVDSTF FSISSSDLVS KWMGESEKLV ANLFQMAREN
201: APSIIFIDEI DSLCGQRGEC NENEASRRIK TELLVQMQGF DNSNDKVLVL AATNMPHVLD QAMRRRFDKC IYIPLPDLKA RKDTFKIHIG DTPHSLTEGD
301: FVSLAYQTEG FSGSDIAVCV KDALFQPVRK TQDAKFFIKA DDDTWTPSEQ SQPGSIQTTM QELASKGLAA KILLPPISKI DFDEVLVRQR PTVSKKDLVV
401: YEKFTQEFSE EEIFISPLSN EKPQSHDVPF KKSEEEILTM QKKTKSEEEI LTMQKKTKSP MRNFLNVWAK ACCCASTI

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.