Factsheet for Zm00001d039904_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013583_P001
Zm00001d031179_P001
Zm00001d034949_P001
Zm00001d037415_P002
Zm00001d037417_P002
Zm00001d045870_P001
Zm00001d048410_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	Zm00001d048410_P004	AT3G54840.1	17468262
AT2G27600.1	Zm00001d013583_P001	AT4G19640.1	17468262
AT2G27600.1	Zm00001d031179_P001	AT4G19640.1	17468262
AT2G27600.1	Zm00001d034949_P001	AT4G19640.1	17468262
AT2G27600.1	Zm00001d037415_P002	AT4G26750.1	17468262
AT2G27600.1	Zm00001d037417_P002	AT4G26750.1	17468262
AT2G27600.1	Zm00001d045870_P001	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00346	Sorghum	cytosol	99.08	98.85
Os01t0141100-02	Rice	cytosol, plasma membrane	68.05	97.69
TraesCS3D01G053600.1	Wheat	cytosol	95.4	94.75
TraesCS3A01G054100.1	Wheat	cytosol	95.4	94.75
Zm00001d008596_P005	Maize	cytosol	99.08	94.73
TraesCS3B01G065200.1	Wheat	cytosol	95.17	94.52
GSMUA_Achr4P24320_001	Banana	cytosol	85.75	91.42
GSMUA_Achr2P22550_001	Banana	cytosol	85.75	90.53
Bra018640.1-P	Field mustard	cytosol	88.74	89.77
CDX93578	Canola	cytosol	88.74	89.77
GSMUA_Achr3P01430_001	Banana	cytosol	84.6	89.54
KRH22691	Soybean	cytosol	83.91	89.24
KRH26619	Soybean	nucleus	89.43	89.22
CDX95077	Canola	cytosol	88.28	89.1
CDX83275	Canola	cytosol	88.51	88.91
Bra000503.1-P	Field mustard	cytosol	88.28	88.68
KRH25197	Soybean	cytosol	88.28	88.48
Bra012009.1-P	Field mustard	cytosol	87.82	88.22
CDY04504	Canola	cytosol	87.59	88.19
KRH30451	Soybean	cytosol	87.82	88.02
CDY31186	Canola	cytosol	87.82	88.02
CDX71438	Canola	cytosol	86.67	87.88
AT2G27600.1	Thale cress	cytosol	87.82	87.82
VIT_13s0106g00490.t01	Wine grape	cytosol	87.13	87.33
PGSC0003DMT400050194	Potato	cytosol	85.29	85.29
Solyc11g007170.1.1	Tomato	cytosol	79.08	85.15
Os01t0141300-00	Rice	cytosol	76.55	69.67
HORVU3Hr1G010300.1	Barley	cytosol, plastid	80.92	67.18
Zm00001d029385_P001	Maize	cytosol	18.39	41.88
Zm00001d049686_P001	Maize	plastid	19.54	35.56
Zm00001d043410_P002	Maize	cytosol	32.18	33.73
Zm00001d045483_P002	Maize	cytosol	34.94	30.52
Zm00001d011611_P005	Maize	cytosol	34.94	29.46
Zm00001d011563_P019	Maize	mitochondrion	33.33	27.62
Zm00001d014775_P002	Maize	plastid	23.91	26.6
Zm00001d036410_P002	Maize	plastid	23.91	21.85
Zm00001d041083_P005	Maize	nucleus	32.41	20.8
Zm00001d043841_P003	Maize	cytosol	34.71	16.7
Zm00001d039315_P003	Maize	vacuole	29.2	15.1
Zm00001d008983_P001	Maize	vacuole	29.2	15.01
Zm00001d009702_P001	Maize	endoplasmic reticulum	27.82	14.35
Zm00001d052248_P009	Maize	mitochondrion	27.13	11.96
Zm00001d007139_P007	Maize	cytosol, plastid	26.67	10.97
Zm00001d047494_P007	Maize	cytosol	26.67	10.49
Zm00001d029120_P004	Maize	cytosol	26.9	10.39
Zm00001d048689_P004	Maize	plastid	29.66	10.29
Zm00001d007698_P002	Maize	plastid	29.43	10.11

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	UniProt:B8A2W9	EMBL:BT055911	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:MIT	InterPro:MIT_dom_sf	ProteinID:ONM30138.1	ProteinID:ONM30143.1	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF04212	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137
SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540	UniParc:UPI0001917576	InterPro:Vps4_C
EnsemblPlantsGene:Zm00001d039904	EnsemblPlants:Zm00001d039904_P006	EnsemblPlants:Zm00001d039904_T006	SEG:seg	:	:

Description

Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1

Coordinates

chr3:+:18861858..18870691

Molecular Weight (calculated)

48232.4 Da

IEP (calculated)

8.050

GRAVY (calculated)

-0.499

Length

435 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVKQAVQED NAGNYVKAFP LYMNALEYFK THLKYEKNPK IKEAITAKFT EYLRRAEEIR AVLDEGGAGP GANGGDAAVA TRPKTKGKDG
101: DGGNGGDDSE QSKLRAGLNS AIITEKPNIK WNDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSISSSD
201: LVSKWMGESE KLVANLFQMA RENAPSIIFI DEIDSLCGQR GEGNESEASR RIKTELLVQM QGVGHNDDKV LVLAATNTPY ALDQAVRRRF DKRIYIPLPD
301: LKARQHMFKV HLGDTPHSLT ESDFESLARR TDGFSGSDVA VCVKDVLFEP VRKTQDAMFF FKADGDMWMP CGPKQPGAVQ TTMQELASKG LAAKILPPPI
401: SRADFEKVLS RQRPTVSKKD LEVHERFTKE FGEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.