Factsheet for Zm00001d043841_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01274	Sorghum	cytosol	56.31	98.07
Zm00001d011611_P005	Maize	cytosol	55.64	97.48
Os01t0683100-01	Rice	extracellular	52.88	92.1
TraesCS3D01G265900.1	Wheat	cytosol	52.32	90.79
TraesCS3B01G299100.1	Wheat	cytosol	52.32	90.79
TraesCS3A01G265700.1	Wheat	cytosol	52.21	90.59
HORVU3Hr1G063300.1	Barley	cytosol	52.1	90.4
Solyc06g066810.2.1	Tomato	cytosol	46.13	80.5
PGSC0003DMT400042654	Potato	cytosol	45.8	79.92
VIT_09s0002g05260.t01	Wine grape	cytosol	46.02	79.85
AT1G80350.1	Thale cress	cytosol	46.13	79.73
CDY37590	Canola	cytosol	44.91	79.45
KXG19781	Sorghum	cytosol	46.46	78.95
CDY38662	Canola	cytosol	44.91	78.68
KRH09800	Soybean	cytosol	41.59	78.66
Bra008479.1-P	Field mustard	cytosol	45.46	77.84
CDX79393	Canola	cytosol	45.35	77.5
KRH44395	Soybean	cytosol	45.69	77.49
KRH47511	Soybean	cytosol	45.24	77.02
CDY57698	Canola	cytosol	45.24	77.02
Bra003561.1-P	Field mustard	cytosol	45.13	76.84
GSMUA_Achr4P00810_001	Banana	cytosol	46.46	68.74
Zm00001d029385_P001	Maize	cytosol	8.3	39.27
Zm00001d043410_P002	Maize	cytosol	16.7	36.39
Zm00001d049686_P001	Maize	plastid	9.4	35.56
Zm00001d039904_P006	Maize	cytosol	16.7	34.71
Zm00001d008596_P005	Maize	cytosol	16.81	33.41
Zm00001d011563_P019	Maize	mitochondrion	17.92	30.86
Zm00001d045483_P002	Maize	cytosol	15.93	28.92
Zm00001d014775_P002	Maize	plastid	11.73	27.11
Zm00001d036410_P002	Maize	plastid	12.17	23.11
Zm00001d041083_P005	Maize	nucleus	17.15	22.86
Zm00001d039315_P003	Maize	vacuole	15.93	17.12
Zm00001d008983_P001	Maize	vacuole	15.82	16.9
Zm00001d009702_P001	Maize	endoplasmic reticulum	15.6	16.73
Zm00001d052248_P009	Maize	mitochondrion	14.82	13.58
Zm00001d007139_P007	Maize	cytosol, plastid	15.15	12.96
Zm00001d047494_P007	Maize	cytosol	15.6	12.75
Zm00001d029120_P004	Maize	cytosol	15.82	12.7
Zm00001d007698_P002	Maize	plastid	16.04	11.45
Zm00001d048689_P004	Maize	plastid	15.82	11.4

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:1.3.7	EntrezGene:103651345	Gene3D:3.40.50.300	UniProt:A0A1D6NFE4
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008568
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0051013	InterPro:KATNA1	HAMAP:MF_03023
ProteinID:ONM39204.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI000844927D	InterPro:Vps4_C	EnsemblPlantsGene:Zm00001d043841	EnsemblPlants:Zm00001d043841_P003
EnsemblPlants:Zm00001d043841_T003	SEG:seg	:	:	:	:

Description

Katanin p60 ATPase-containing subunit A1

Coordinates

chr3:-:211598479..211613691

Molecular Weight (calculated)

100590.0 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.472

Length

904 amino acids

Sequence
(BLAST)

001: MDAFLSCLDD GPTASPPRAA PPPSPALSAR DLYSFICSGP LVDRIGYTKE KVADSIGRWL RCGVDVARLL RLDELQLSEA EKARVYQFYI PVFLWCEDQV
101: IEHRAKYSEG DDIPPLVIGV SAPQGSGKTT LVFALDYLFQ VAGRKSATLS IDDFYLTAKE QNELRDRYPG NALLELRGNA GSHNLQFSVE TLESLMKLTK
201: EGIKMKVPRY DKSAFGGRGD RADPSVWPEV EGPLELEVVN NNLEAYYDAW DRFIDSWIVI KIREPSSVYQ WRLQAEIAMR ADGKPGMSDE EFQTGLTESP
301: FRPQNFDFRN QTKPLSYYSS RPPSRSLHRT GELLLLVSSH TTHFVGIREP YRRIFAAAAE MANPLAGLQD HIKLARDYAL EGLYDTSIIF FDGAIAQINK
401: HLTTLDDALV RTKWMNCKKA ISEEVESVKQ LDAQLKSLKE APGTRRSSSP PIRSNKSFVF QPLDEYPTSS PAPFDDPDVW APPRDTPTRR PTRGQSSARK
501: SSQDGAWARG SSRTGTPSRS SKPNGSKGGS VVKSSTASNS SVRKGKPSSS KADSASSDAE EGKSKKGQYE GPDMDLAAML ERDVLDSTPG VRWDDVAGLS
601: EAKRLLEEAV VLPLWMPEYF QGIRRPWKGV LMFGPPGTGK TLLAKAVATE CGTTFFNVSS ATLASKWRGE SERMVRCLFD LARAYAPSTI FIDEIDSLCT
701: SRGASGEHES SRRVKSELLV QIDGVNNSST TEDGQPKIVM VLAATNFPWD IDEALRLANS YSHIHFILGQ VDHQSLEDWW LRRRLEKRIY IPLPDFESRK
801: ALININLRTV QIAADVNIDE VARRTEGYSG DDLTNVCRDA SMNGMRRKIA GKTRDEIKNM SKDDIAKDPV AMCDFVEALV KVQKSVSPAD IEKHEKWMAE
901: FGSA

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.