Factsheet for GSMUA_Achr4P00810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g05260.t01	Wine grape	cytosol	71.03	83.3
Os01t0683100-01	Rice	extracellular	70.21	82.66
Zm00001d011611_P005	Maize	cytosol	68.9	81.59
TraesCS3B01G299100.1	Wheat	cytosol	69.39	81.38
TraesCS3D01G265900.1	Wheat	cytosol	69.39	81.38
EES01274	Sorghum	cytosol	69.07	81.31
TraesCS3A01G265700.1	Wheat	cytosol	69.07	81.0
HORVU3Hr1G063300.1	Barley	cytosol	68.74	80.61
KRH47511	Soybean	cytosol	69.89	80.41
PGSC0003DMT400042654	Potato	cytosol	68.09	80.31
KRH44395	Soybean	cytosol	69.72	79.92
Solyc06g066810.2.1	Tomato	cytosol	67.59	79.73
KRH09800	Soybean	cytosol	62.19	79.5
CDY37590	Canola	cytosol	65.79	78.67
CDY38662	Canola	cytosol	66.12	78.29
AT1G80350.1	Thale cress	cytosol	66.94	78.2
Bra008479.1-P	Field mustard	cytosol	66.28	76.7
CDX79393	Canola	cytosol	66.28	76.56
Bra003561.1-P	Field mustard	cytosol	65.63	75.52
CDY57698	Canola	cytosol	65.47	75.33
KXG19781	Sorghum	cytosol	59.41	68.23
Zm00001d043841_P003	Maize	cytosol	68.74	46.46
GSMUA_Achr10P...	Banana	cytosol	25.04	39.53
GSMUA_Achr7P25300_001	Banana	cytosol	26.19	39.31
GSMUA_Achr4P24320_001	Banana	cytosol	25.2	37.75
GSMUA_Achr2P22550_001	Banana	cytosol	25.04	37.14
GSMUA_Achr3P01430_001	Banana	cytosol	24.39	36.25
GSMUA_Achr6P09890_001	Banana	cytosol	17.84	35.86
GSMUA_Achr11P...	Banana	cytosol	16.2	31.33
GSMUA_Achr11P...	Banana	cytosol	16.04	30.91
GSMUA_Achr10P...	Banana	cytosol	24.22	28.46
GSMUA_Achr11P...	Banana	endoplasmic reticulum	18.0	28.35
GSMUA_Achr4P05220_001	Banana	endoplasmic reticulum	17.68	27.84
GSMUA_Achr6P27610_001	Banana	cytosol	25.7	23.97
GSMUA_Achr11P...	Banana	cytosol	24.06	20.85
GSMUA_Achr9P05420_001	Banana	cytosol, mitochondrion	21.6	20.25
GSMUA_Achr7P14270_001	Banana	cytosol	21.28	18.39
GSMUA_Achr11P...	Banana	cytosol	24.22	16.46
GSMUA_Achr8P33760_001	Banana	cytosol	24.71	13.68
GSMUA_Achr8P10090_001	Banana	cytosol	24.22	13.62
GSMUA_Achr3P00740_001	Banana	mitochondrion	25.04	13.34
GSMUA_Achr7P07310_001	Banana	mitochondrion	21.93	12.77

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:13.4.4.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0000226	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008568	GO:GO:0009653
GO:GO:0009825	GO:GO:0009832	GO:GO:0009987	GO:GO:0010091	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016049	GO:GO:0016787	GO:GO:0030154	GO:GO:0040007	GO:GO:0043622
GO:GO:0051013	EnsemblPlantsGene:GSMUA_Achr4G00810_001	EnsemblPlants:GSMUA_Achr4P00810_001	EnsemblPlants:GSMUA_Achr4T00810_001	InterPro:KATNA1	UniProt:M0SJZ8
HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI00029533C2	SEG:seg	:

Description

Katanin p60 ATPase-containing subunit [Source:GMGC_GENE;Acc:GSMUA_Achr4G00810_001]

Coordinates

chr4:-:692815..700766

Molecular Weight (calculated)

67957.3 Da

IEP (calculated)

7.992

GRAVY (calculated)

-0.318

Length

611 amino acids

Sequence
(BLAST)

001: MAGTLAGLQD HLKLAREYAL EGLYDTSIIF FDGAIAQINK HLSTLDDTEI RAKWMNCKKA ISEEVGIVKQ LDAELRAFKE IPGTRRSSSP PISVKSSFVF
101: QPLDEYPASS GASDDPDVWR PPSRDTQNRR PTRTTQTGMR KSSQDGTWAR GSSRAGTVGR GAKASSGKSS STARSSAASG KKGKSSSSKP DAQNGDAEEA
201: KPKKGQYEGP DADLAAMLER DVLETSPGVR WDDVAGLSEA KRLLEEAVVL PLWMPEYFQG IRRPWKGVLM FGPPGTGKTL LAKAVATECG TTFFNVSSAT
301: LASKWRGESE RMVRCLFDLA RAYAPSTIFI DEIDSLCNSR GASGEHESSR RVKSELLVQI DGVNNSSTGE DGQKKIVMVL AATNFPWDID EALRRRLEKR
401: IYIPLPNFES RKELIKINLR TVEVAPDVDI DEVARRTEGY SGDDLTNVCR DASLNGMRRK IAGKTRDEIK NMAKEEISKD PVAMCDFEEA LTKVQRSLPQ
501: VVVEIPDLCW KSLVVSWWWF DVVLFITSTM LCFNYIIVKI LFLSEDGHIV ETFLLESIAL IIISNLMCDI IHGTEICFFF RKMCIKTSYI CLKSRKHISP
601: PYSNRTPPIY I

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.