Factsheet for GSMUA_Achr11P20330_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	71.61	71.84
GSMUA_Achr9P05420_001	Banana	cytosol, mitochondrion	59.94	29.14
GSMUA_Achr11P...	Banana	endoplasmic reticulum	35.65	29.12
GSMUA_Achr4P05220_001	Banana	endoplasmic reticulum	34.7	28.35
GSMUA_Achr7P14270_001	Banana	cytosol	60.88	27.3
GSMUA_Achr10P...	Banana	cytosol	30.28	24.81
GSMUA_Achr7P25300_001	Banana	cytosol	30.91	24.08
GSMUA_Achr4P24320_001	Banana	cytosol	28.39	22.06
TraesCS3D01G228100.4	Wheat	cytosol	55.84	22.04
TraesCS3B01G254800.2	Wheat	cytosol	55.2	21.74
GSMUA_Achr11P...	Banana	cytosol	48.27	21.7
TraesCS3A01G225200.3	Wheat	cytosol	55.2	21.69
EES20020	Sorghum	endoplasmic reticulum	57.41	21.62
GSMUA_Achr2P22550_001	Banana	cytosol	28.08	21.6
HORVU3Hr1G055830.5	Barley	cytosol	54.89	21.53
GSMUA_Achr3P01430_001	Banana	cytosol	27.76	21.41
Os05t0584600-02	Rice	vacuole	57.73	21.4
Zm00001d009702_P001	Maize	endoplasmic reticulum	56.78	21.35
Os01t0623500-01	Rice	cytosol	53.31	20.81
GSMUA_Achr10P...	Banana	cytosol	34.07	20.77
GSMUA_Achr6P09890_001	Banana	cytosol	19.87	20.72
TraesCS1D01G431700.1	Wheat	mitochondrion	55.52	20.68
TraesCS1A01G423100.1	Wheat	mitochondrion	55.52	20.66
KXG32842	Sorghum	cytosol	50.47	20.65
TraesCS1B01G455200.1	Wheat	mitochondrion	55.52	20.61
HORVU1Hr1G092440.13	Barley	cytosol, golgi, mitochondrion, plastid	56.15	20.53
KXG32925	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	51.42	19.64
GSMUA_Achr11P...	Banana	cytosol	47.95	16.91
GSMUA_Achr6P27610_001	Banana	cytosol	33.44	16.18
GSMUA_Achr4P00810_001	Banana	cytosol	30.91	16.04
GSMUA_Achr8P33760_001	Banana	cytosol	48.27	13.86
GSMUA_Achr8P10090_001	Banana	cytosol	47.32	13.8
GSMUA_Achr3P00740_001	Banana	mitochondrion	48.27	13.34
GSMUA_Achr7P07310_001	Banana	mitochondrion	42.59	12.87

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr11G20330_001	EnsemblPlants:GSMUA_Achr11P20330_001	EnsemblPlants:GSMUA_Achr11T20330_001	UniProt:M0RTW3	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF98	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI0002969104	:	:	:	:

Description

Putative Spastin [Source:GMGC_GENE;Acc:GSMUA_Achr11G20330_001]

Coordinates

chr11:+:21327018..21329203

Molecular Weight (calculated)

35696.3 Da

IEP (calculated)

8.811

GRAVY (calculated)

-0.239

Length

317 amino acids

Sequence
(BLAST)

001: MRSYIVPPKK IRVTFDDIGA LDETKKLLHE LIILPLQRPE LFKGLLEPSR GILLFGPPGT GKTMLAKALA HEAGATFINV SMSAIASKWF GHSESNTRAL
101: ERDTIASVTN EFMIHWDGLL TKSEDRILVL AATNRPFNLD EAIIRRFDHR IMVGLPSQEG RESILRTLLS KEKTEQLDFK ELATMTVGYS GSDLKNLCVA
201: AAYRPLRELV QREQPTRLVG LTCCFICFGA HLLNLVLCYS EKRYAGKYPY EVQSNKQGSV EPTTACRSIN MEDLRKAINQ VAKSCATKSY LVEQLEEWNK
301: SFGDGGSRKQ QQLSYYI

Best Arabidopsis Sequence Match ( AT1G64110.3 )
(BLAST)

001: MDSKQMLLSA LGVGVGVGVG LGLASGQAVG KWAGGNSSSN NAVTADKMEK EILRQVVDGR ESKITFDEFP YYLSEQTRVL LTSAAYVHLK HFDASKYTRN
101: LSPASRAILL SGPAELYQQM LAKALAHFFD AKLLLLDVND FALKIQSKYG SGNTESSSFK RSPSESALEQ LSGLFSSFSI LPQREESKAG GTLRRQSSGV
201: DIKSSSMEGS SNPPKLRRNS SAAANISNLA SSSNQAPLKR SSSWSFDEKL LVQSLYKVLA YVSKANPIVL YLRDVENFLF RSQRTYNLFQ KLLQKLSGPV
301: LILGSRIVDL SSEDAQEIDE KLSAVFPYNI DIRPPEDETH LVSWKSQLER DMNMIQTQDN RNHIMEVLSE NDLICDDLES ISFEDTKVLS NYIEEIVVSA
401: LSYHLMNNKD PEYRNGKLVI SSISLSHGFS LFREGKAGGR EKLKQKTKEE SSKEVKAESI KPETKTESVT TVSSKEEPEK EAKAEKVTPK APEVAPDNEF
501: EKRIRPEVIP AEEINVTFKD IGALDEIKES LQELVMLPLR RPDLFTGGLL KPCRGILLFG PPGTGKTMLA KAIAKEAGAS FINVSMSTIT SKWFGEDEKN
601: VRALFTLASK VSPTIIFVDE VDSMLGQRTR VGEHEAMRKI KNEFMSHWDG LMTKPGERIL VLAATNRPFD LDEAIIRRFE RRIMVGLPAV ENREKILRTL
701: LAKEKVDENL DYKELAMMTE GYTGSDLKNL CTTAAYRPVR ELIQQERIKD TEKKKQREPT KAGEEDEGKE ERVITLRPLN RQDFKEAKNQ VAASFAAEGA
801: GMGELKQWNE LYGEGGSRKK EQLTYFL

Arabidopsis Description

p-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5A3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.