Factsheet for GSMUA_Achr6P27610_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g02130.t01	Wine grape	nucleus	68.7	67.37
TraesCS5B01G110300.1	Wheat	nucleus	70.08	66.72
KRG94255	Soybean	nucleus	66.87	66.46
TraesCS5D01G123800.1	Wheat	nucleus	69.77	66.42
KRH57680	Soybean	nucleus	66.56	66.16
TraesCS5A01G109500.1	Wheat	nucleus	69.16	65.84
Zm00001d041083_P005	Maize	nucleus	68.09	65.78
CDY34176	Canola	plastid	64.27	64.97
CDY28494	Canola	plastid	64.12	64.81
Bra032982.1-P	Field mustard	plastid	63.97	64.66
KXG23422	Sorghum	nucleus	67.48	64.24
PGSC0003DMT400052226	Potato	nucleus	63.51	62.28
Solyc02g094100.2.1	Tomato	nucleus	63.05	61.83
AT3G27120.1	Thale cress	nucleus	63.82	61.47
HORVU5Hr1G029910.10	Barley	cytosol, mitochondrion, nucleus	62.44	57.36
Os12t0443800-01	Rice	nucleus	25.5	43.72
GSMUA_Achr10P...	Banana	cytosol	21.98	37.21
GSMUA_Achr4P24320_001	Banana	cytosol	22.14	35.54
GSMUA_Achr7P25300_001	Banana	cytosol	21.98	35.38
GSMUA_Achr3P01430_001	Banana	cytosol	21.53	34.31
GSMUA_Achr2P22550_001	Banana	cytosol	21.53	34.22
GSMUA_Achr6P09890_001	Banana	cytosol	15.73	33.88
GSMUA_Achr10P...	Banana	cytosol	26.56	33.46
GSMUA_Achr11P...	Banana	cytosol	16.18	33.44
GSMUA_Achr11P...	Banana	cytosol	15.11	31.33
GSMUA_Achr4P05220_001	Banana	endoplasmic reticulum	17.4	29.38
GSMUA_Achr11P...	Banana	endoplasmic reticulum	17.4	29.38
GSMUA_Achr4P00810_001	Banana	cytosol	23.97	25.7
GSMUA_Achr9P05420_001	Banana	cytosol, mitochondrion	22.44	22.55
GSMUA_Achr11P...	Banana	cytosol	24.12	22.41
GSMUA_Achr7P14270_001	Banana	cytosol	21.98	20.37
GSMUA_Achr11P...	Banana	cytosol	25.65	18.69
GSMUA_Achr8P33760_001	Banana	cytosol	26.26	15.58
GSMUA_Achr8P10090_001	Banana	cytosol	25.04	15.09
GSMUA_Achr3P00740_001	Banana	mitochondrion	26.11	14.91
GSMUA_Achr7P07310_001	Banana	mitochondrion	22.6	14.11

Protein Annotations

Gene3D:1.10.8.60	MapMan:13.3.6.5.5.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0045128	EnsemblPlantsGene:GSMUA_Achr6G27610_001
EnsemblPlants:GSMUA_Achr6P27610_001	EnsemblPlants:GSMUA_Achr6T27610_001	UniProt:M0TAQ6	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336
ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF17	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002964836
InterPro:Vps4_C	SEG:seg	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G27610_001]

Coordinates

chr6:+:28070453..28079657

Molecular Weight (calculated)

72871.7 Da

IEP (calculated)

8.248

GRAVY (calculated)

-0.545

Length

655 amino acids

Sequence
(BLAST)

001: MAEERSGGEG EEGRSSASAT NNWRKEVDVK LKRLQSLLFG ADLALERGDH AAAGTLALRL IGFLDSQTRN PIDASFVSPI RAEASSKLAA ASRALAVDSD
101: RCAFEQARKD VGCIFLKKGD VDIERIKESK YFRTFINKSK ENVAGDLENQ RLLDKQHEKS SIHTAKLMTQ TKITSIYGNK PSNPDNATYK TVRNCQSDIP
201: QECTIEKPHG MTSRSKHRHS EFTSPICENA KSPSSNEEAS LDISHHGFVT ARTKLEMDAK QRPCSMGHAN ASVSPQVNNN SFGNVRNYGM RYGNVTRRGV
301: RGNFVPPIRS SGGNTGNMIS PRISGQCDDA LQDSTRKCIE MLCGPDGELP EKLRNLEPRL IEHVSNEIMD KDPNVRWDDI AGLEHAKKCV TEMVIWPLLR
401: PDIFHGCRSP GRGLLLFGPP GTGKTMIGKA IAGEAKATFF YISASSLTSK WIGEGEKLVR ALFGVASCRQ PAVIFVDEID SLLSQRKSEG EHESSRRLKT
501: QFLIEMEGFD GGNDQILLIG ATNRPQELDE AARRRLTKRL YIPLPSSEAR AWIVRNLLEK DGLFKLSEED IIAICKLTEG YSGSDMKNLV KDASMGPLRE
601: ALRQGIEITK LRKEDMRAVT RQDFEYAMQE VRPSVSLNEL STYEEWNRQF GSLLI

Best Arabidopsis Sequence Match ( AT3G27120.1 )
(BLAST)

001: MCGSVVSDSE REFEFHFWGF GHLGKEEERI MAGKRSSPFS SPLLRPPPEF LNVKEEGETE TPCWRKEVDE NLKRLQSLLF GADKFLEKSD FSSAQILGLR
101: LLGFLDSRSV TDADRDFIGP IRREVASKID LALEGLVSDS DRKAFELANT APGAIFGSKG GFDVEKIKQS KYFGFHVSQS NGKGVKEMEE RHDTDKLIPK
201: APKSMMQAKL TSLYGNSIGK PDNQRKTSVN NQDRASDECV IVERSHGFGF GTKRPHAETS SLANDGEVKE DGAPNGFVSA KIKLEMDVRQ KRGSTESPSS
301: CLSPQSDKNA LGRGYGSRSG GLRRGYRSNF VPPVKTNGNN VGNLTSRIGG KTDDALDDST RTCLEMLCGP DGELPEKLRN LEPRLIEHVS NEIMDRDPNV
401: RWDDIAGLEH AKKCVTEMVI WPLLRPDIFK GCRSPGKGLL LFGPPGTGKT MIGKAIAGEA KATFFYISAS SLTSKWIGEG EKLVRALFGV ASCRQPAVIF
501: VDEIDSLLSQ RKSDGEHESS RRLKTQFLIE MEGFDSGSEQ ILLIGATNRP QELDEAARRR LTKRLYIPLP SSEARAWIIQ NLLKKDGLFT LSDDDMNIIC
601: NLTEGYSGSD MKNLVKDATM GPLREALKRG IDITNLTKDD MRLVTLQDFK DALQEVRPSV SQNELGIYEN WNNQFGSLSL

Arabidopsis Description

FIGL1ATPase family AAA domain-containing protein FIGL1 [Source:UniProtKB/Swiss-Prot;Acc:F4JEX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.