Factsheet for VIT_14s0068g02130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57680	Soybean	nucleus	74.25	75.27
KRG94255	Soybean	nucleus	73.95	74.96
PGSC0003DMT400052226	Potato	nucleus	72.16	72.16
Solyc02g094100.2.1	Tomato	nucleus	71.41	71.41
CDY28494	Canola	plastid	69.16	71.3
CDY34176	Canola	plastid	68.56	70.68
Bra032982.1-P	Field mustard	plastid	68.41	70.52
GSMUA_Achr6P27610_001	Banana	cytosol	67.37	68.7
AT3G27120.1	Thale cress	nucleus	68.71	67.5
TraesCS5D01G123800.1	Wheat	nucleus	65.87	63.95
TraesCS5B01G110300.1	Wheat	nucleus	65.87	63.95
TraesCS5A01G109500.1	Wheat	nucleus	65.27	63.37
Zm00001d041083_P005	Maize	nucleus	63.17	62.24
KXG23422	Sorghum	nucleus	62.87	61.05
HORVU5Hr1G029910.10	Barley	cytosol, mitochondrion, nucleus	60.03	56.24
VIT_10s0003g03500.t01	Wine grape	cytosol	23.35	39.29
Os12t0443800-01	Rice	nucleus	22.31	39.01
VIT_15s0048g01720.t01	Wine grape	cytosol	27.25	37.07
VIT_06s0080g00160.t01	Wine grape	extracellular	21.26	32.79
VIT_09s0002g05260.t01	Wine grape	cytosol	24.7	31.67
VIT_13s0106g00490.t01	Wine grape	cytosol	20.51	31.57
VIT_16s0050g01830.t01	Wine grape	endoplasmic reticulum, vacuole	24.4	20.84
VIT_16s0050g01850.t01	Wine grape	endoplasmic reticulum, vacuole	25.15	20.07
VIT_16s0050g01840.t01	Wine grape	cytosol, golgi, plasma membrane	23.8	19.8
VIT_02s0025g00650.t01	Wine grape	endoplasmic reticulum, vacuole	24.4	19.5
VIT_01s0011g02220.t01	Wine grape	cytosol, mitochondrion, plastid	22.9	15.3
VIT_16s0098g01260.t01	Wine grape	endoplasmic reticulum	17.52	15.16
VIT_17s0000g01550.t01	Wine grape	cytosol, plastid	26.95	14.8
VIT_07s0005g00200.t01	Wine grape	plastid	27.1	14.06

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100256552	wikigene:100256552	MapMan:13.3.6.5.5.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:AM440955	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CAN60755	ProteinID:CAN60755.1	ProteinID:CCB47025
ProteinID:CCB47025.1	UniProt:F6H3Y5	EMBL:FN595232	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010569	GO:GO:0016787	GO:GO:0016887	EntrezGene:LOC100256552	wikigene:LOC100256552	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF17	SMART:SM00382
SUPFAM:SSF52540	TIGR:TC63318	UniParc:UPI00021083DE	ArrayExpress:VIT_14s0068g02130	EnsemblPlantsGene:VIT_14s0068g02130	EnsemblPlants:VIT_14s0068g02130.t01
InterPro:Vps4_C	RefSeq:XP_003633767	RefSeq:XP_003633767.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:-:25724377..25732572

Molecular Weight (calculated)

73889.7 Da

IEP (calculated)

8.948

GRAVY (calculated)

-0.574

Length

668 amino acids

Sequence
(BLAST)

001: MAGKEKAWCG NGRAKMEGDV CWRKQVDQNL KRLHSLLFGS DLALHEGDFS SAQVLGLSLI GFLDSHSHSD VDEAFIRPIR SQVYSKIHQA RRSLIPDSDR
101: QAFEQAGRVP GRVFGMRGDI DIEKIKQSKY FRALLQQSKG GAANELVDQL GRQDQLSFKA SKVLTQSKLI SLYGNDKSSY KSSMHSKSNS SEDCVIVEKA
201: HSYHSHPKGQ GASAFLKVEE EERAHGNGLG TKRGHMEISS PGNDIAKSPS SNEETQNDGF GKGFVTARAK LEMDARQRRG SAGSPSASVS PQSDNNFTSR
301: GYGAKSYGFP RRGIRGNFVP PIRSNGGNAS NMTSQIAGKG DDALDDSTKR CLEMLYGPDG EVPEKLRNLE PRLIEHVSNE IMDRDPNVRW DDIAGLEHAK
401: KCVTEMVIWP LLRPDIFKGC RSPGRGLLLF GPPGTGKTMI GKAIAGEAKA TFFYISASSL TSKWIGEGEK LVRALFGVAS CRQPAVIFVD EIDSLLSQRK
501: SEGEHESSRR LKTQFLIEME GFDSGSEQIL LIGATNRPQE LDEAARRRLT KRLYIPLPSS EARAWIIRNL LEKDGLFKLS KEHIDTICKL TEGYSGSDMK
601: NLVKDASMGP LREALRQGIE ITKLKKEDMR PVTLQDFESA LQEVRPSVSL NELGTYDDWN KQFGSLSL

Best Arabidopsis Sequence Match ( AT3G27120.1 )
(BLAST)

001: MCGSVVSDSE REFEFHFWGF GHLGKEEERI MAGKRSSPFS SPLLRPPPEF LNVKEEGETE TPCWRKEVDE NLKRLQSLLF GADKFLEKSD FSSAQILGLR
101: LLGFLDSRSV TDADRDFIGP IRREVASKID LALEGLVSDS DRKAFELANT APGAIFGSKG GFDVEKIKQS KYFGFHVSQS NGKGVKEMEE RHDTDKLIPK
201: APKSMMQAKL TSLYGNSIGK PDNQRKTSVN NQDRASDECV IVERSHGFGF GTKRPHAETS SLANDGEVKE DGAPNGFVSA KIKLEMDVRQ KRGSTESPSS
301: CLSPQSDKNA LGRGYGSRSG GLRRGYRSNF VPPVKTNGNN VGNLTSRIGG KTDDALDDST RTCLEMLCGP DGELPEKLRN LEPRLIEHVS NEIMDRDPNV
401: RWDDIAGLEH AKKCVTEMVI WPLLRPDIFK GCRSPGKGLL LFGPPGTGKT MIGKAIAGEA KATFFYISAS SLTSKWIGEG EKLVRALFGV ASCRQPAVIF
501: VDEIDSLLSQ RKSDGEHESS RRLKTQFLIE MEGFDSGSEQ ILLIGATNRP QELDEAARRR LTKRLYIPLP SSEARAWIIQ NLLKKDGLFT LSDDDMNIIC
601: NLTEGYSGSD MKNLVKDATM GPLREALKRG IDITNLTKDD MRLVTLQDFK DALQEVRPSV SQNELGIYEN WNNQFGSLSL

Arabidopsis Description

FIGL1ATPase family AAA domain-containing protein FIGL1 [Source:UniProtKB/Swiss-Prot;Acc:F4JEX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.