Factsheet for VIT_10s0003g03500.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58481	Soybean	cytosol	80.86	79.65
Solyc02g070440.2.1	Tomato	cytosol	76.83	79.02
KRH42362	Soybean	cytosol, endoplasmic reticulum	80.6	79.01
PGSC0003DMT400054532	Potato	cytosol	75.82	77.58
CDY17260	Canola	cytosol	73.8	76.5
CDX84641	Canola	cytosol	71.54	75.73
CDX84306	Canola	cytosol	73.55	75.65
GSMUA_Achr10P...	Banana	cytosol	73.3	75.19
CDX79566	Canola	cytosol	71.03	75.0
Os01t0757400-02	Rice	cytosol	72.8	74.87
EES01499	Sorghum	cytosol	71.79	74.8
Bra005414.1-P	Field mustard	cytosol	73.8	74.74
HORVU3Hr1G072910.6	Barley	cytosol	70.78	74.73
GSMUA_Achr7P25300_001	Banana	cytosol	76.32	74.45
TraesCS3A01G294400.1	Wheat	cytosol	70.53	74.07
TraesCS3B01G305600.2	Wheat	cytosol	72.8	73.16
AT2G34560.2	Thale cress	cytosol	72.04	72.77
TraesCS3B01G329000.2	Wheat	cytosol	70.53	72.35
OQU87315	Sorghum	cytosol	73.3	72.21
TraesCS3A01G271900.1	Wheat	cytosol	72.54	72.0
TraesCS3D01G271500.1	Wheat	cytosol	72.04	71.5
Os01t0673500-01	Rice	cytosol	73.8	71.46
Zm00001d043410_P002	Maize	cytosol	72.04	68.92
TraesCS3D01G294200.1	Wheat	plastid	71.03	63.66
HORVU3Hr1G061800.1	Barley	cytosol, plastid	72.54	61.94
Zm00001d011563_P019	Maize	mitochondrion	73.55	55.62
Bra022979.1-P	Field mustard	plastid	69.77	48.01
VIT_13s0106g00490.t01	Wine grape	cytosol	37.28	34.1
VIT_06s0080g00160.t01	Wine grape	extracellular	36.78	33.72
VIT_09s0002g05260.t01	Wine grape	cytosol	41.06	31.29
VIT_15s0048g01720.t01	Wine grape	cytosol	36.52	29.53
VIT_14s0068g02130.t01	Wine grape	nucleus	39.29	23.35
VIT_16s0050g01830.t01	Wine grape	endoplasmic reticulum, vacuole	31.74	16.11
VIT_02s0025g00650.t01	Wine grape	endoplasmic reticulum, vacuole	33.0	15.67
VIT_16s0050g01840.t01	Wine grape	cytosol, golgi, plasma membrane	30.98	15.32
VIT_16s0050g01850.t01	Wine grape	endoplasmic reticulum, vacuole	32.24	15.29
VIT_16s0098g01260.t01	Wine grape	endoplasmic reticulum	29.47	15.16
VIT_01s0011g02220.t01	Wine grape	cytosol, mitochondrion, plastid	31.23	12.4
VIT_17s0000g01550.t01	Wine grape	cytosol, plastid	35.26	11.51
VIT_07s0005g00200.t01	Wine grape	plastid	34.51	10.64

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100253260	wikigene:100253260	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	ProteinID:CBI30888	ProteinID:CBI30888.3	UniProt:D7TK66	EMBL:FN595992	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887	EntrezGene:LOC100253260	wikigene:LOC100253260
InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR23074	PANTHER:PTHR23074:SF92	SMART:SM00382	SUPFAM:SSF52540
TIGR:TC67987	UniParc:UPI00015CAB41	ArrayExpress:VIT_10s0003g03500	EnsemblPlantsGene:VIT_10s0003g03500	EnsemblPlants:VIT_10s0003g03500.t01	unigene:Vvi.11956
RefSeq:XP_002276286	RefSeq:XP_002276286.2	RefSeq:XP_010655668.1	RefSeq:XP_010655669.1	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:5887564..5907585

Molecular Weight (calculated)

44456.1 Da

IEP (calculated)

6.871

GRAVY (calculated)

-0.525

Length

397 amino acids

Sequence
(BLAST)

001: MADEPFLTRW SFQFGRKKEP EKHDAAESSG KPVSNGNSSN GTANGGGHVK NTSDLAIYEQ YRTQERGSAN GNGVLSDRYD EKPQKSLLPS FESADMRALG
101: ESLSRDIIRG SPDVKWDSIK GLENAKRLLK EAVVMPIKYP KYFTGLLSPW KGILLFGPPG TGKTMLAKAV ATECKTTFFN ISASSVVSKW RGDSEKLVKV
201: LFELARHHAP STIFLDEIDA LISQRGEGRS EHEASRRLKT ELLVQMDGLT KTDELVFVLA ATNLPWELDA AMLRRLEKRI LVPLPEPEAR RAMFEELLPS
301: VPGEEKLPYD LMVERTEGYS GSDIRLLCKE AAMQPLRRLM AHLEDKAEVV PEEELPKVGP IKHDDIETAL KNTRPSAHLH VHRYDKFNTD YGSQILQ

Best Arabidopsis Sequence Match ( AT2G34560.1 )
(BLAST)

001: MATDEPSQTR WSFLFGRKKL PEEDVSNKDQ PEDGSSNGNN GDVNNNSSPV TNQDGNTALA NGNVIREKPK KSMFPPFESA ETRTLAESLS RDIIRGNPNI
101: KWESIKGLEN AKKLLKEAVV MPIKYPTYFN GLLTPWKGIL LFGPPGTGKT MLAKAVATEC NTTFFNISAS SVVSKWRGDS EKLIRVLFDL ARHHAPSTIF
201: LDEIDAIISQ RGGEGRSEHE ASRRLKTELL IQMDGLQKTN ELVFVLAATN LPWELDAAML RRLEKRILVP LPDPEARRGM FEMLIPSQPG DEPLPHDVLV
301: EKSEGYSGSD IRILCKEAAM QPLRRTLAIL EDREDVVPED ELPKIGPILP EDIDRALSNT RPSAHLHAHL YDKFNDDYGS QILK

Arabidopsis Description

AT2G34560 protein [Source:UniProtKB/TrEMBL;Acc:B9DGC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.