Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3A01G294400.1 | Wheat | cytosol | 97.87 | 97.35 |
TraesCS3B01G329000.2 | Wheat | cytosol | 96.81 | 94.06 |
Os01t0757400-02 | Rice | cytosol | 91.22 | 88.86 |
EES01499 | Sorghum | cytosol | 89.63 | 88.45 |
TraesCS3D01G294200.1 | Wheat | plastid | 98.67 | 83.75 |
Zm00001d043410_P002 | Maize | cytosol | 90.16 | 81.69 |
GSMUA_Achr7P25300_001 | Banana | cytosol | 78.72 | 72.73 |
Solyc02g070440.2.1 | Tomato | cytosol | 73.14 | 71.24 |
VIT_10s0003g03500.t01 | Wine grape | cytosol | 74.73 | 70.78 |
KRH58481 | Soybean | cytosol | 75.8 | 70.72 |
PGSC0003DMT400054532 | Potato | cytosol | 72.87 | 70.62 |
KRH42362 | Soybean | cytosol, endoplasmic reticulum | 75.53 | 70.12 |
CDX84641 | Canola | cytosol | 68.62 | 68.8 |
CDX79566 | Canola | cytosol | 68.35 | 68.35 |
CDY17260 | Canola | cytosol | 68.88 | 67.62 |
CDX84306 | Canola | cytosol | 68.88 | 67.1 |
Bra005414.1-P | Field mustard | cytosol | 69.15 | 66.33 |
AT2G34560.2 | Thale cress | cytosol | 67.82 | 64.89 |
HORVU3Hr1G061800.1 | Barley | cytosol, plastid | 78.72 | 63.66 |
Bra022979.1-P | Field mustard | plastid | 68.88 | 44.89 |
HORVU6Hr1G038660.1 | Barley | cytosol, mitochondrion | 16.22 | 34.27 |
HORVU4Hr1G059020.1 | Barley | cytosol, endoplasmic reticulum | 20.48 | 31.95 |
HORVU4Hr1G059040.2 | Barley | cytosol | 20.74 | 30.95 |
HORVU3Hr1G063300.1 | Barley | cytosol | 40.69 | 29.37 |
HORVU3Hr1G072480.2 | Barley | cytosol | 19.68 | 29.37 |
HORVU0Hr1G021880.1 | Barley | endoplasmic reticulum | 30.59 | 29.19 |
HORVU7Hr1G026880.14 | Barley | cytosol | 34.04 | 27.53 |
HORVU5Hr1G104980.1 | Barley | endoplasmic reticulum, mitochondrion | 20.74 | 27.27 |
HORVU3Hr1G010300.1 | Barley | cytosol, plastid | 37.23 | 26.72 |
HORVU7Hr1G091480.2 | Barley | plastid | 30.59 | 26.62 |
HORVU7Hr1G013190.8 | Barley | plastid | 38.56 | 25.94 |
HORVU5Hr1G029910.10 | Barley | cytosol, mitochondrion, nucleus | 36.97 | 19.5 |
HORVU3Hr1G055830.5 | Barley | cytosol | 32.98 | 15.35 |
HORVU3Hr1G030770.20 | Barley | cytosol, vacuole | 32.71 | 14.63 |
HORVU1Hr1G092440.13 | Barley | cytosol, golgi, mitochondrion, plastid | 32.18 | 13.96 |
HORVU7Hr1G037870.1 | Barley | plastid | 35.11 | 12.7 |
HORVU6Hr1G075440.6 | Barley | mitochondrion | 32.98 | 12.58 |
HORVU2Hr1G019730.5 | Barley | cytosol, plastid | 34.84 | 12.48 |
HORVU4Hr1G046420.6 | Barley | cytosol, plastid | 34.84 | 11.34 |
HORVU4Hr1G033300.1 | Barley | cytosol | 34.84 | 10.12 |
Protein Annotations
EnsemblPlants:HORVU3Hr1G072910.6 | EnsemblPlantsGene:HORVU3Hr1G072910 | Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005524 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_core | InterPro:P-loop_NTPase | PANTHER:PTHR23074 |
PANTHER:PTHR23074:SF92 | PFAM:PF00004 | SEG:seg | SMART:SM00382 | SUPFAM:SSF52540 | UniParc:UPI000B46D151 |
UniProt:A0A287LM51 | MapMan:50.3.6 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:549897686..549903697
Molecular Weight (calculated)
42244.9 Da
IEP (calculated)
6.336
GRAVY (calculated)
-0.356
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: PSFQDLRAFF GGKKQEPEQN GHANGGVKKR TADLAIYEQY EQQARQPEMR AAAIRDGNAD VIQKPLLPQF ESAEMRNLAE TLLRDIIRGS PDVQWESIKG
101: LETAKRLLKE AVVMPIKYPK YFTGLLSPWK GILLFGPPGT GKTMLAKAVA TECNTTFFNI SASSIVSKWR GDSEKLVKVL FELARHHAPS TIFLDEIDAI
201: ISQRGEARSE HEASRRLKTE LLIQMDGLTK TKDLVFVLAA TNLPWELDAA MLRRLEKRIL VPLPEAEARH SMFKELLPAM TSNLEVPYDI LVEKTEGYSG
301: SDIRLVCKEA AMQPLRRLMS VLEASDELVP EEELPEVGPL KPDDVELALS NTRPSAHLQA HRYEKFNQDY GSHILS
101: LETAKRLLKE AVVMPIKYPK YFTGLLSPWK GILLFGPPGT GKTMLAKAVA TECNTTFFNI SASSIVSKWR GDSEKLVKVL FELARHHAPS TIFLDEIDAI
201: ISQRGEARSE HEASRRLKTE LLIQMDGLTK TKDLVFVLAA TNLPWELDAA MLRRLEKRIL VPLPEAEARH SMFKELLPAM TSNLEVPYDI LVEKTEGYSG
301: SDIRLVCKEA AMQPLRRLMS VLEASDELVP EEELPEVGPL KPDDVELALS NTRPSAHLQA HRYEKFNQDY GSHILS
001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
Arabidopsis Description
AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.