Factsheet for PGSC0003DMT400054532

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070440.2.1	Tomato	cytosol	95.36	95.85
VIT_10s0003g03500.t01	Wine grape	cytosol	77.58	75.82
CDX84641	Canola	cytosol	71.65	74.13
KRH58481	Soybean	cytosol	76.8	73.95
CDX79566	Canola	cytosol	71.39	73.67
CDY17260	Canola	cytosol	72.68	73.63
TraesCS3B01G305600.2	Wheat	cytosol	74.48	73.16
KRH42362	Soybean	cytosol, endoplasmic reticulum	76.29	73.09
HORVU3Hr1G072910.6	Barley	cytosol	70.62	72.87
CDX84306	Canola	cytosol	72.16	72.54
TraesCS3A01G294400.1	Wheat	cytosol	70.62	72.49
Bra005414.1-P	Field mustard	cytosol	72.94	72.19
TraesCS3A01G271900.1	Wheat	cytosol	74.23	72.0
AT2G34560.2	Thale cress	cytosol	72.68	71.76
TraesCS3D01G271500.1	Wheat	cytosol	73.45	71.25
OQU87315	Sorghum	cytosol	73.97	71.22
Os01t0757400-02	Rice	cytosol	70.62	70.98
EES01499	Sorghum	cytosol	69.59	70.87
GSMUA_Achr10P...	Banana	cytosol	70.62	70.8
TraesCS3B01G329000.2	Wheat	cytosol	70.36	70.54
Os01t0673500-01	Rice	cytosol	74.48	70.49
GSMUA_Achr7P25300_001	Banana	cytosol	73.45	70.02
Zm00001d043410_P002	Maize	cytosol	70.36	65.78
TraesCS3D01G294200.1	Wheat	plastid	71.13	62.3
HORVU3Hr1G061800.1	Barley	cytosol, plastid	74.23	61.94
Zm00001d011563_P019	Maize	mitochondrion	73.97	54.67
Bra022979.1-P	Field mustard	plastid	70.88	47.66
PGSC0003DMT400071442	Potato	cytosol	32.22	38.34
PGSC0003DMT400019119	Potato	cytosol	20.62	36.87
PGSC0003DMT400019113	Potato	cytosol	36.6	32.87
PGSC0003DMT400050194	Potato	cytosol	36.08	32.18
PGSC0003DMT400042654	Potato	cytosol	40.46	30.31
PGSC0003DMT400031598	Potato	endoplasmic reticulum	25.77	27.86
PGSC0003DMT400047633	Potato	endoplasmic reticulum	27.06	27.78
PGSC0003DMT400013963	Potato	endoplasmic reticulum	26.55	26.28
PGSC0003DMT400052226	Potato	nucleus	38.14	22.16
PGSC0003DMT400031731	Potato	cytosol, endoplasmic reticulum	31.19	14.51
PGSC0003DMT400051401	Potato	endoplasmic reticulum	30.67	14.34

Protein Annotations

EnsemblPlants:PGSC0003DMT400054532	EnsemblPlantsGene:PGSC0003DMG400021168	EntrezGene:102585839	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
PANTHER:PTHR23074	PANTHER:PTHR23074:SF92	PFAM:PF00004	PGSC:PGSC0003DMG400021168	RefSeq:XP_006352973.1	SEG:seg
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002967A49	UniProt:M1BWI3	MapMan:50.3.6	:

Description

Katanin p60 ATPase-containing subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400021168]

Coordinates

chr2:+:29601300..29609567

Molecular Weight (calculated)

43182.9 Da

IEP (calculated)

6.035

GRAVY (calculated)

-0.364

Length

388 amino acids

Sequence
(BLAST)

001: MADEPALTRW TFPIKFGRRK VPAPDASENG DSVQNGNGSV RNTAELSIFE QYNQANGGST HTNGVQSAGV DGKPQKSLLP PFESAEMRTL AESLTRDILR
101: GNPDVKWESI KGLETAKRLL KEAVVMPIKY PKYFKGLLTP WKGILLFGPP GTGKTMLAKA VATECNTTFF NISASSVVSK WRGDSEKLIK VLFELARHHA
201: PSTIFLDEID AIISQRGEAR SEHESSRRLK TELLIQMDGL NRTDELVFVL AATNLPWELD AAMLRRLEKR ILVPLPEAEA RCGMFEELLP SLPEEAPLPY
301: DLLVEKTKGF SGSDIRLLCK EAAMQPLRRL MAELDKREEL VPEDELPNVG PITVTDIEMA LMNTRPSAHL NAPRYDKFNS DYGSHALQ

Best Arabidopsis Sequence Match ( AT2G34560.1 )
(BLAST)

001: MATDEPSQTR WSFLFGRKKL PEEDVSNKDQ PEDGSSNGNN GDVNNNSSPV TNQDGNTALA NGNVIREKPK KSMFPPFESA ETRTLAESLS RDIIRGNPNI
101: KWESIKGLEN AKKLLKEAVV MPIKYPTYFN GLLTPWKGIL LFGPPGTGKT MLAKAVATEC NTTFFNISAS SVVSKWRGDS EKLIRVLFDL ARHHAPSTIF
201: LDEIDAIISQ RGGEGRSEHE ASRRLKTELL IQMDGLQKTN ELVFVLAATN LPWELDAAML RRLEKRILVP LPDPEARRGM FEMLIPSQPG DEPLPHDVLV
301: EKSEGYSGSD IRILCKEAAM QPLRRTLAIL EDREDVVPED ELPKIGPILP EDIDRALSNT RPSAHLHAHL YDKFNDDYGS QILK

Arabidopsis Description

AT2G34560 protein [Source:UniProtKB/TrEMBL;Acc:B9DGC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.