Factsheet for PGSC0003DMT400019119

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019113	Potato	cytosol	99.08	49.77
Solyc11g067230.1.1	Tomato	cytosol	98.62	49.54
PGSC0003DMT400050194	Potato	cytosol	85.25	42.53
PGSC0003DMT400054532	Potato	cytosol	36.87	20.62
PGSC0003DMT400071442	Potato	cytosol	29.95	19.94
PGSC0003DMT400031598	Potato	endoplasmic reticulum	27.19	16.43
PGSC0003DMT400042654	Potato	cytosol	36.41	15.25
PGSC0003DMT400047633	Potato	endoplasmic reticulum	25.81	14.81
PGSC0003DMT400013963	Potato	endoplasmic reticulum	25.35	14.03
PGSC0003DMT400052226	Potato	nucleus	33.64	10.93
PGSC0003DMT400031731	Potato	cytosol, endoplasmic reticulum	29.49	7.67
PGSC0003DMT400051401	Potato	endoplasmic reticulum	27.65	7.23

Protein Annotations

EnsemblPlants:PGSC0003DMT400019119	EnsemblPlantsGene:PGSC0003DMG402007403	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	InterPro:Vps4_C
PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	PFAM:PF00004	PFAM:PF09336	PGSC:PGSC0003DMG402007403	ScanProsite:PS00674
SUPFAM:SSF52540	UniParc:UPI0002966504	UniProt:M1ABM2	MapMan:35.1	:	:

Description

Vacuolar protein sorting-associated protein VPS4 [Source:PGSC_GENE;Acc:PGSC0003DMG402007403]

Coordinates

chr11:-:40149174..40151220

Molecular Weight (calculated)

24216.7 Da

IEP (calculated)

6.364

GRAVY (calculated)

-0.503

Length

217 amino acids

Sequence
(BLAST)

001: MARESAPSII FVDEIDSLCG QRGEGNESEA SRRIKTELLV QMQGVGHNDD KVLVLAATNT PYALDQAIRR RFDKRIYIPL PDLKARQHMF KVHLGDTPHN
101: LSESDFEDLA RKTEGFSGSD VSVCVKDVLF EPVRKTQDAV FFTQTSNGTW IPCGPKQRGA VQTTMQELAA KGLASQIIPP PITKTDFDKV LARQRPTVSK
201: SDLEVHDRFT KEFGEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.