Factsheet for TraesCS3D01G294200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G294400.1	Wheat	cytosol	85.1	99.74
HORVU3Hr1G072910.6	Barley	cytosol	83.75	98.67
TraesCS3B01G329000.2	Wheat	cytosol	84.2	96.38
Os01t0757400-02	Rice	cytosol	79.01	90.67
EES01499	Sorghum	cytosol	77.65	90.29
Zm00001d043410_P002	Maize	cytosol	77.43	82.65
TraesCS3D01G271500.1	Wheat	cytosol	66.82	74.0
GSMUA_Achr7P25300_001	Banana	cytosol	67.49	73.46
Solyc02g070440.2.1	Tomato	cytosol	62.53	71.76
PGSC0003DMT400054532	Potato	cytosol	62.3	71.13
VIT_10s0003g03500.t01	Wine grape	cytosol	63.66	71.03
KRH58481	Soybean	cytosol	64.56	70.97
KRH42362	Soybean	cytosol, endoplasmic reticulum	64.33	70.37
CDX84641	Canola	cytosol	58.92	69.6
CDX79566	Canola	cytosol	58.69	69.15
CDY17260	Canola	cytosol	59.59	68.93
CDX84306	Canola	cytosol	59.59	68.39
Bra005414.1-P	Field mustard	cytosol	59.82	67.6
AT2G34560.2	Thale cress	cytosol	58.47	65.9
Bra022979.1-P	Field mustard	plastid	59.37	45.58
TraesCS3D01G053600.1	Wheat	cytosol	32.05	32.42
TraesCS7D01G381400.1	Wheat	endoplasmic reticulum	26.19	31.18
TraesCS7D01G060200.1	Wheat	cytosol	33.41	31.03
TraesCS6D01G122900.1	Wheat	cytosol	30.47	30.89
TraesCS3D01G265900.1	Wheat	cytosol	34.54	29.37
TraesCS5D01G123800.1	Wheat	nucleus	32.51	20.93
TraesCS3D01G228100.4	Wheat	cytosol	28.22	15.57
TraesCS3D01G159200.1	Wheat	cytosol, vacuole	28.44	15.07
TraesCS1D01G431700.1	Wheat	mitochondrion	27.77	14.45
TraesCS7D01G186200.1	Wheat	mitochondrion	29.8	13.58
TraesCS7D01G127200.1	Wheat	cytosol	29.8	13.36
TraesCS6D01G284600.1	Wheat	mitochondrion	28.22	12.72
TraesCS4D01G168600.1	Wheat	cytosol	30.47	12.2
TraesCS2D01G114500.1	Wheat	cytosol, plastid	29.8	11.64
TraesCS4D01G145100.12	Wheat	plastid	30.25	10.91

Protein Annotations

EnsemblPlants:TraesCS3D01G294200.1	EnsemblPlantsGene:TraesCS3D01G294200	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR23074
PANTHER:PTHR23074:SF92	PFAM:PF00004	SEG:seg	SMART:SM00382	SUPFAM:SSF52540	TIGR:cd00009
MapMan:50.3.6	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:405810704..405817140

Molecular Weight (calculated)

48944.9 Da

IEP (calculated)

6.619

GRAVY (calculated)

-0.343

Length

443 amino acids

Sequence
(BLAST)

001: MGGILTNRGG THPPISGNQP LVLVSVPPPP DSPGSPSELT NSTPVDSLAL TLPSGARRRS RQIQAMDLRA FFGGKKQEPE QNGHANGAAP NGGVKKRTAD
101: LAIYEQYEQQ ARQPEMRAAA IRDGNADVIQ KPLLPQFESA EMRNLAETLL RDIIRGSPDV QWESIKGLET AKRLLKEAVV MPIKYPKYFT GLLSPWKGIL
201: LFGPPGTGKT MLAKAVATEC NTTFFNISAS SIVSKWRGDS EKLVKVLFEL ARHHAPSTIF LDEIDAIISQ RGEARSEHEA SRRLKTELLI QMDGLTKTND
301: LVFVLAATNL PWELDAAMLR RLEKRILVPL PEAEARHAMF KELLPAMTSN LEVPYDILVE KTEGYSGSDI RLVCKEAAMQ PLRRLMSVLE ASDELVPEEE
401: LPEVGPLKPE DVELALSNTR PSAHLQAHRY EKFNQDYGSH ILS

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.