Factsheet for TraesCS6D01G122900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G140700.1
TraesCS1B01G157100.1
TraesCS1D01G139500.1
TraesCS4A01G035800.1
TraesCS4A01G294600.1
TraesCS4B01G019100.2
TraesCS4B01G268600.1
TraesCS4D01G017300.1
TraesCS4D01G267900.1
TraesCS5B01G014400.1
TraesCS5D01G022200.2
TraesCS7A01G223600.1
TraesCS7B01G190400.1
TraesCS7D01G225200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	TraesCS1A01G140700.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS1B01G157100.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS1D01G139500.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4A01G035800.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4B01G268600.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4D01G267900.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4A01G294600.1	AT4G19640.1	17468262
AT2G27600.1	TraesCS4B01G019100.2	AT4G19640.1	17468262
AT2G27600.1	TraesCS4D01G017300.1	AT4G19640.1	17468262
AT2G27600.1	TraesCS5B01G014400.1	AT4G19640.1	17468262
AT2G27600.1	TraesCS5D01G022200.2	AT4G19640.1	17468262
AT2G27600.1	TraesCS7A01G223600.1	AT4G26750.1	17468262
AT2G27600.1	TraesCS7B01G190400.1	AT4G26750.1	17468262
AT2G27600.1	TraesCS7D01G225200.1	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G133300.1	Wheat	cytosol	98.17	97.95
TraesCS6B01G161700.1	Wheat	cytosol	97.71	97.71
Os02t0159900-01	Rice	plasma membrane	80.78	81.52
GSMUA_Achr4P24320_001	Banana	cytosol	71.85	76.96
GSMUA_Achr2P22550_001	Banana	cytosol	71.17	75.49
GSMUA_Achr3P01430_001	Banana	cytosol	70.71	75.18
Bra018640.1-P	Field mustard	cytosol	73.46	74.65
CDX93578	Canola	cytosol	73.46	74.65
KRH26619	Soybean	nucleus	74.14	74.31
KRH25197	Soybean	cytosol	73.68	74.19
CDX95077	Canola	cytosol	73.0	74.01
TraesCS3D01G053600.1	Wheat	cytosol	74.14	73.97
KRH30451	Soybean	cytosol	73.46	73.96
CDX83275	Canola	cytosol	73.23	73.9
Bra012009.1-P	Field mustard	cytosol	73.0	73.67
Bra000503.1-P	Field mustard	cytosol	73.0	73.67
CDX71438	Canola	cytosol	72.31	73.66
CDY04504	Canola	cytosol	72.77	73.61
CDY31186	Canola	cytosol	73.0	73.5
KRH22691	Soybean	cytosol	68.65	73.35
Solyc11g007170.1.1	Tomato	cytosol	67.73	73.27
AT2G27600.1	Thale cress	cytosol	72.54	72.87
VIT_13s0106g00490.t01	Wine grape	cytosol	72.08	72.58
PGSC0003DMT400050194	Potato	cytosol	71.85	72.18
TraesCS3D01G271500.1	Wheat	cytosol	32.72	35.75
TraesCS7D01G060200.1	Wheat	cytosol	33.87	31.03
TraesCS3D01G294200.1	Wheat	plastid	30.89	30.47
TraesCS7D01G381400.1	Wheat	endoplasmic reticulum	24.26	28.49
TraesCS3D01G265900.1	Wheat	cytosol	33.64	28.21
TraesCS5D01G123800.1	Wheat	nucleus	32.72	20.78
TraesCS3D01G159200.1	Wheat	cytosol, vacuole	27.69	14.47
TraesCS3D01G228100.4	Wheat	cytosol	26.54	14.45
TraesCS1D01G431700.1	Wheat	mitochondrion	26.09	13.4
TraesCS6D01G284600.1	Wheat	mitochondrion	27.0	12.0
TraesCS7D01G127200.1	Wheat	cytosol	26.77	11.84
TraesCS7D01G186200.1	Wheat	mitochondrion	26.32	11.83
TraesCS4D01G145100.12	Wheat	plastid	28.83	10.26
TraesCS2D01G114500.1	Wheat	cytosol, plastid	26.54	10.23
TraesCS4D01G168600.1	Wheat	cytosol	25.63	10.12

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:MIT
InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212	PFAM:PF09336	ScanProsite:PS00674
PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS6D01G122900	EnsemblPlants:TraesCS6D01G122900.1	InterPro:Vps4_C	TIGR:cd00009	SEG:seg	:

Description

No Description!

Coordinates

chr6D:+:87466326..87468714

Molecular Weight (calculated)

47907.7 Da

IEP (calculated)

6.729

GRAVY (calculated)

-0.427

Length

437 amino acids

Sequence
(BLAST)

001: MYGAMKDQAV ALVRRAVQED DAGDYAAALQ HYVQALDYFA AHLKYEHNPR VRDAIAARLP GYVARAEEIR ALLDGSPAPC GPGGDGVAAA ATRKKDPRGG
101: GGEDDERASE RAKLRAGLHS AIVSEKPNVR WSDVAGLDGA KQALQEAVVL PVRFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSISSSD
201: LLSKWMGESE KLVANLFEMA RENAPSIIFI DEIDSLCGQR GEGNESESSR RVKTELLVQM QGVGHNDDKV LVLAATNTPY ALDQAVRRRF DKRIYIPLPD
301: LKARQRMLKV HLGDTPHSLT KSDFESVAHR TDGFSGSDIA VCLKDVLFEP IRKTQDAMFF FRSEDGGGTW TPCGPKQPGA VQTTMEELAA EGMADQITPP
401: PISRTDFDKV LARQRPTVSK AELGVYTRFT REFGEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.