Factsheet for TraesCS7D01G225200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G054100.1
TraesCS3B01G065200.1
TraesCS3D01G053600.1
TraesCS4A01G106400.1
TraesCS4B01G197800.1
TraesCS4D01G198600.1
TraesCS6A01G133300.1
TraesCS6B01G161700.1
TraesCS6D01G122900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	TraesCS3A01G054100.1	AT2G27600.1	17468262
AT4G26750.1	TraesCS3B01G065200.1	AT2G27600.1	17468262
AT4G26750.1	TraesCS3D01G053600.1	AT2G27600.1	17468262
AT4G26750.1	TraesCS6A01G133300.1	AT2G27600.1	17468262
AT4G26750.1	TraesCS6B01G161700.1	AT2G27600.1	17468262
AT4G26750.1	TraesCS6D01G122900.1	AT2G27600.1	17468262
AT4G26750.1	TraesCS4A01G106400.1	AT3G45640.1	21798944
AT4G26750.1	TraesCS4B01G197800.1	AT3G45640.1	21798944
AT4G26750.1	TraesCS4D01G198600.1	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G190400.1	Wheat	cytosol	98.15	98.15
TraesCS7A01G223600.1	Wheat	cytosol	95.89	95.89
HORVU7Hr1G045860.5	Barley	cytosol	95.48	95.09
Os06t0308800-01	Rice	nucleus	82.14	81.97
EER88310	Sorghum	nucleus	77.62	79.75
Zm00001d037417_P002	Maize	nucleus	76.59	77.23
Zm00001d045870_P001	Maize	nucleus	76.8	66.19
Solyc07g064980.2.1	Tomato	nucleus	50.51	59.13
GSMUA_Achr3P10980_001	Banana	nucleus	50.1	58.65
PGSC0003DMT400057424	Potato	nucleus	49.28	57.55
VIT_19s0090g01240.t01	Wine grape	nucleus	49.9	57.04
GSMUA_Achr9P12660_001	Banana	nucleus	48.05	56.52
CDX94288	Canola	cytosol	47.64	55.37
CDX89306	Canola	cytosol	47.43	55.13
Zm00001d037415_P002	Maize	cytosol	32.65	54.83
Bra026406.1-P	Field mustard	cytosol	47.02	54.65
AT4G26750.1	Thale cress	cytosol	46.2	53.44
GSMUA_Achr9P19810_001	Banana	cytosol	49.9	53.29
KRH73817	Soybean	nucleus	46.82	48.82
KRH14310	Soybean	cytosol	47.64	47.64

Protein Annotations

Gene3D:1.20.5.420	Gene3D:1.25.40.270	MapMan:22.5.4.4.2	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005768	GO:GO:0005771	GO:GO:0006810	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009814	GO:GO:0016192	GO:GO:0042803
GO:GO:0080001	GO:GO:1900426	GO:GO:1903335	InterPro:IPR023175	PFAM:PF04652	PANTHER:PTHR12741
PANTHER:PTHR12741:SF4	EnsemblPlantsGene:TraesCS7D01G225200	EnsemblPlants:TraesCS7D01G225200.1	InterPro:VPS_Vta1/CALS_N	SEG:seg	:

Description

No Description!

Coordinates

chr7D:+:185159642..185164880

Molecular Weight (calculated)

53524.1 Da

IEP (calculated)

6.199

GRAVY (calculated)

-0.906

Length

487 amino acids

Sequence
(BLAST)

001: MGSGTEPAKG LLPYLQRADE LQKHEPLVAY YCRLYAMEKG LVIPQKERTK MTNSILVSLI NQLEKDKKSL TLGPDDHLHL EGFASSVFAK ADKQDRAGRA
101: DINTAKTFYA ASIFFEILSQ FGELQPDLEQ KQKYAIWKAA EIRKALKEGR KPEAGPPGGD KDEAPASTTT IDHDMGRSQS FGNRQNGNEA SPHPIDKDFS
201: RRDSFSAVQP GNISSRQGAE KFNDHVSAQT HFSPPPPPSE FSSPQSQFSP PPHSSYSSPS YQGTDYPPPD VHNPHPNYSS PSYTSTDYPT NEVHKPPSNY
301: SPPPYTRADH PSDDGYNPQS NDKPDISAYP QTYHQPPYTI EPQHTSQNYY ATETPPAPYN YPNFQSYPSF QDSTLPSVTT HQPPFHPASD GGVPTAPSYS
401: PPASNHPAPT QYHPSADATH QVTPPAAPPA SQYAYDSNYQ PAVEKIAEAH KAARFAVGAL AFDDVSIAVE HLKRALDLLT NPSAETH

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.