Factsheet for PGSC0003DMT400057424

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400050194
PGSC0003DMT400077272

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	PGSC0003DMT400050194	AT2G27600.1	17468262
AT4G26750.1	PGSC0003DMT400077272	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064980.2.1	Tomato	nucleus	92.57	92.79
VIT_19s0090g01240.t01	Wine grape	nucleus	68.82	67.37
CDX94288	Canola	cytosol	61.63	61.34
Bra026406.1-P	Field mustard	cytosol	61.39	61.1
CDX89306	Canola	cytosol	60.43	60.14
AT4G26750.1	Thale cress	cytosol	59.95	59.38
GSMUA_Achr3P10980_001	Banana	nucleus	56.83	56.97
KRH14310	Soybean	cytosol	64.27	55.03
KRH73817	Soybean	nucleus	61.39	54.82
GSMUA_Achr9P12660_001	Banana	nucleus	53.24	53.62
GSMUA_Achr9P19810_001	Banana	cytosol	56.83	51.97
EER88310	Sorghum	nucleus	56.35	49.58
TraesCS7B01G190400.1	Wheat	cytosol	57.79	49.49
TraesCS7D01G225200.1	Wheat	cytosol	57.55	49.28
HORVU7Hr1G045860.5	Barley	cytosol	57.31	48.88
TraesCS7A01G223600.1	Wheat	cytosol	56.83	48.67
Os06t0308800-01	Rice	nucleus	56.59	48.36
Zm00001d037417_P002	Maize	nucleus	55.64	48.03
Zm00001d045870_P001	Maize	nucleus	55.88	41.24
Zm00001d037415_P002	Maize	cytosol	27.34	39.31

Protein Annotations

Gene3D:1.20.5.420	Gene3D:1.25.40.270	EntrezGene:102599038	MapMan:22.5.4.4.2	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005768	GO:GO:0005771	GO:GO:0006810	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009814	GO:GO:0016192
GO:GO:0042803	GO:GO:0080001	GO:GO:1900426	GO:GO:1903335	InterPro:IPR023175	UniProt:M1C108
PFAM:PF04652	EnsemblPlantsGene:PGSC0003DMG400022298	PGSC:PGSC0003DMG400022298	EnsemblPlants:PGSC0003DMT400057424	PANTHER:PTHR12741	PANTHER:PTHR12741:SF4
UniParc:UPI000295AA38	InterPro:VPS_Vta1/CALS_N	RefSeq:XP_006346184.1	SEG:seg	:	:

Description

Hydroxyproline-rich glycoprotein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022298]

Coordinates

chr7:+:55138757..55143777

Molecular Weight (calculated)

45777.5 Da

IEP (calculated)

5.898

GRAVY (calculated)

-0.829

Length

417 amino acids

Sequence
(BLAST)

001: MSKDNEPAKL LLPYLQRADE LQKHEPLVAY YCRLYAMERG LRIPQNERTK TTSSILVSLI NQLEKDKKSL KLGPDDHLHV EGFALNVFAK ADKQDRAGRA
101: DLNTAKTFYA ASIFFEILNQ FGELQPDLEQ KQKYAAWKAA DIRKALKEGR KPVPGPPGDE GDTSELSSAP SDTYDLQSSG TDSIIKPARE SDSSNHMYDS
201: AQYSANRPSP PAATPPPPPS HIPPSPPAAT TQSPPSHFPP SSPSYPGAEY SSHNFQQPPP VDASENSSYP QPYHHQSYAQ EPQSHLPQPH YPSQFPNFQS
301: YPSFSESSLP SAPSHYPSYY QGADASYSTL PPSNTANYPS STQYNSNERN GSASEVAAAP VKTYAYDSNY QPPPEKIAEA HKAARFAVGA LAFDDVSIAV
401: DYLKKSLELL TNPSADQ

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.