Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026406.1-P | Field mustard | cytosol | 87.65 | 88.07 |
| CDX89306 | Canola | cytosol | 87.17 | 87.59 |
| CDX94288 | Canola | cytosol | 86.7 | 87.11 |
| PGSC0003DMT400057424 | Potato | nucleus | 59.38 | 59.95 |
| Solyc07g064980.2.1 | Tomato | nucleus | 58.91 | 59.62 |
| VIT_19s0090g01240.t01 | Wine grape | nucleus | 58.91 | 58.22 |
| GSMUA_Achr3P10980_001 | Banana | nucleus | 52.26 | 52.88 |
| KRH73817 | Soybean | nucleus | 55.58 | 50.11 |
| GSMUA_Achr9P12660_001 | Banana | nucleus | 48.93 | 49.76 |
| KRH14310 | Soybean | cytosol | 57.24 | 49.49 |
| GSMUA_Achr9P19810_001 | Banana | cytosol | 52.49 | 48.46 |
| EER88310 | Sorghum | nucleus | 53.44 | 47.47 |
| TraesCS7B01G190400.1 | Wheat | cytosol | 53.68 | 46.41 |
| TraesCS7D01G225200.1 | Wheat | cytosol | 53.44 | 46.2 |
| Zm00001d037417_P002 | Maize | nucleus | 52.73 | 45.96 |
| HORVU7Hr1G045860.5 | Barley | cytosol | 52.73 | 45.4 |
| TraesCS7A01G223600.1 | Wheat | cytosol | 52.26 | 45.17 |
| Os06t0308800-01 | Rice | nucleus | 51.78 | 44.67 |
| Zm00001d045870_P001 | Maize | nucleus | 53.21 | 39.65 |
| Zm00001d037415_P002 | Maize | cytosol | 23.99 | 34.83 |
Protein Annotations
| Gene3D:1.20.5.420 | Gene3D:1.25.40.270 | MapMan:22.5.4.4.2 | EntrezGene:828782 | UniProt:A0A178UUB7 | ProteinID:AEE85248.1 |
| ArrayExpress:AT4G26750 | EnsemblPlantsGene:AT4G26750 | RefSeq:AT4G26750 | TAIR:AT4G26750 | RefSeq:AT4G26750-TAIR-G | EnsemblPlants:AT4G26750.1 |
| TAIR:AT4G26750.1 | EMBL:AY048219 | EMBL:AY094009 | Unigene:At.24208 | ProteinID:CAB36521.1 | ProteinID:CAB79530.1 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005771 | GO:GO:0006810 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009791 | GO:GO:0009814 | GO:GO:0010008 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 |
| GO:GO:0042803 | GO:GO:0080001 | GO:GO:1900426 | GO:GO:1903335 | InterPro:IPR023175 | RefSeq:NP_194405.1 |
| ProteinID:OAO97110.1 | PFAM:PF04652 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12741 | PANTHER:PTHR12741:SF4 |
| UniProt:Q9SZ15 | UniParc:UPI00000A5231 | InterPro:VPS_Vta1/CALS_N | SEG:seg | : | : |
Description
LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
Coordinates
chr4:-:13475617..13478523
Molecular Weight (calculated)
46220.0 Da
IEP (calculated)
6.196
GRAVY (calculated)
-0.892
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.