CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00346
KXG39626

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	EES00346	AT2G27600.1	17468262
AT4G26750.1	KXG39626	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037417_P002	Maize	nucleus	92.41	90.68
Os06t0308800-01	Rice	nucleus	81.65	79.3
TraesCS7B01G190400.1	Wheat	cytosol	79.96	77.82
TraesCS7D01G225200.1	Wheat	cytosol	79.75	77.62
TraesCS7A01G223600.1	Wheat	cytosol	78.06	75.98
HORVU7Hr1G045860.5	Barley	cytosol	77.85	75.46
Zm00001d037415_P002	Maize	cytosol	37.34	61.03
GSMUA_Achr3P10980_001	Banana	nucleus	51.48	58.65
Solyc07g064980.2.1	Tomato	nucleus	50.84	57.93
GSMUA_Achr9P12660_001	Banana	nucleus	50.42	57.73
VIT_19s0090g01240.t01	Wine grape	nucleus	51.27	57.04
PGSC0003DMT400057424	Potato	nucleus	49.58	56.35
CDX94288	Canola	cytosol	48.1	54.42
Bra026406.1-P	Field mustard	cytosol	47.68	53.94
CDX89306	Canola	cytosol	47.68	53.94
GSMUA_Achr9P19810_001	Banana	cytosol	51.48	53.51
AT4G26750.1	Thale cress	cytosol	47.47	53.44
KRH73817	Soybean	nucleus	48.1	48.82
KRH14310	Soybean	cytosol	49.16	47.84

Protein Annotations

Gene3D:1.20.5.420	Gene3D:1.25.40.270	MapMan:22.5.4.4.2	EntrezGene:8078238	UniProt:C5Z1L0	EnsemblPlants:EER88310
ProteinID:EER88310	ProteinID:EER88310.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005768
GO:GO:0005771	GO:GO:0006810	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0009791	GO:GO:0009814	GO:GO:0016192	GO:GO:0042803	GO:GO:0080001
GO:GO:1900426	GO:GO:1903335	InterPro:IPR023175	PFAM:PF04652	PANTHER:PTHR12741	PANTHER:PTHR12741:SF4
EnsemblPlantsGene:SORBI_3010G130000	unigene:Sbi.6328	UniParc:UPI0001A88F2C	InterPro:VPS_Vta1/CALS_N	RefSeq:XP_002436943.1	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:17558022..17562289

Molecular Weight (calculated)

52150.6 Da

IEP (calculated)

5.699

GRAVY (calculated)

-0.888

Length

474 amino acids

Sequence
(BLAST)

001: MGSESEPAKG LLPYLQRADE LQKHEPLVSY YCRLYAMEKG LRIPQKERTK TTNSILISLM NQLEKDKKSL TLGPDDNLHL EGFALNVFAK ADKQDRAGRA
101: DINTAKTFYA ASIFFEILNQ FGELQPDVEQ KQKYAIWKAA EIRKALKEGR KPEAGPPGGD KDEAPVNTTT ISQDMGQSPS FNVHQGSEAS PRPVNMDFSR
201: RDSFSAVQPG NNVPRQSTEF NDHPSTQLPY SPPPPSQSQY PSPSQSYSSP SYQATDYPSD LHTPSPNFSS PPYTSTDHPT NEVHKPPSNY SPPPYTRTDH
301: PSSDGYNPHS NDKPDVSAYP QAYQPPPYTI DPQHTSQNYY STEAPAAPYN YPNFQSYPSF QDSTAPSVPT HQSSFYPASD GPAATSYTPA SNSSAPTHYL
401: STAESSPQLA PPAVPPASQY KYDSSYQPEV EKIAEAHKAA RFAVGALAFD DVSVAVDHLK RALDLLTNPS AEPH

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.