CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89065
KRH22691
KRH24954
KRH25197
KRH26619
KRH30451

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	KRH22691	AT2G27600.1	17468262
AT4G26750.1	KRH25197	AT2G27600.1	17468262
AT4G26750.1	KRH26619	AT2G27600.1	17468262
AT4G26750.1	KRH30451	AT2G27600.1	17468262
AT4G26750.1	KRG89065	AT3G45640.1	21798944
AT4G26750.1	KRH24954	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14310	Soybean	cytosol	91.01	87.27
VIT_19s0090g01240.t01	Wine grape	nucleus	59.74	65.49
Solyc07g064980.2.1	Tomato	nucleus	55.89	62.74
PGSC0003DMT400057424	Potato	nucleus	54.82	61.39
Bra026406.1-P	Field mustard	cytosol	52.03	58.0
CDX89306	Canola	cytosol	52.03	58.0
CDX94288	Canola	cytosol	51.61	57.52
AT4G26750.1	Thale cress	cytosol	50.11	55.58
GSMUA_Achr3P10980_001	Banana	nucleus	48.61	54.57
GSMUA_Achr9P12660_001	Banana	nucleus	44.33	50.0
GSMUA_Achr9P19810_001	Banana	cytosol	47.54	48.68
EER88310	Sorghum	nucleus	48.82	48.1
TraesCS7B01G190400.1	Wheat	cytosol	48.82	46.82
TraesCS7D01G225200.1	Wheat	cytosol	48.82	46.82
HORVU7Hr1G045860.5	Barley	cytosol	48.82	46.63
Zm00001d037417_P002	Maize	nucleus	48.18	46.58
Os06t0308800-01	Rice	nucleus	48.39	46.31
TraesCS7A01G223600.1	Wheat	cytosol	47.97	46.0
Zm00001d045870_P001	Maize	nucleus	48.82	40.35
Zm00001d037415_P002	Maize	cytosol	23.55	37.93

Protein Annotations

EMBL:ACUP02001288	EnsemblPlants:KRH73817	EnsemblPlantsGene:GLYMA_02G295200	EntrezGene:100806599	Gene3D:1.20.5.420	Gene3D:1.25.40.270
InterPro:IPR023175	InterPro:VPS_Vta1/CALS_N	PANTHER:PTHR12741	PANTHER:PTHR12741:SF4	PFAM:PF04652	ProteinID:KRH73817
ProteinID:KRH73817.1	SEG:seg	UniParc:UPI0001BA6B14	UniProt:I1JJE3	MapMan:22.5.4.4.2	:

Description

hypothetical protein

Coordinates

chr2:+:47325496..47328300

Molecular Weight (calculated)

51884.2 Da

IEP (calculated)

6.199

GRAVY (calculated)

-0.933

Length

467 amino acids

Sequence
(BLAST)

001: MANENEPAKL LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNALLVSLM KQLEKDKKSI QLGPEDNLYL EGFALNVFGK ADKQDRAGRA
101: DLTTAKTFYA ASIFFEILNQ FGAVQPDLEQ KQKYAVWKAA EIRKALKEGR KPTAGPPDGD EDLSVPLSSS SDRYDLGTTE NTVSSPGPES DSSRSYHNPA
201: NYQNLPSIHP AAPKFHDTVN DQHSANIPPS MPFHDRVDNN KHSSVVSPSS HSFTPGVYPS QDYHSPPPSR DYHSPPPSQD YHSPPSSQDY HPPPPSQDYH
301: PPPSQDYHPP PARSEGSYSE LYNHQQYSPE NSQHLGPNYP SHETSSYSYP HFQSYPSFTE SSLPSVPSNY THYQGSDVSY SSQSAPLTTN HSSSAQHSSR
401: NETVEPKPTT TQAYQYDSNY QPAPEKIAEA HKAARFAVGA LAFDDVSVAV DFLKKSLELL TNPSAGQ

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.