Factsheet for Zm00001d037417_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008596_P005
Zm00001d028711_P003
Zm00001d039904_P006
Zm00001d047758_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	Zm00001d008596_P005	AT2G27600.1	17468262
AT4G26750.1	Zm00001d039904_P006	AT2G27600.1	17468262
AT4G26750.1	Zm00001d028711_P003	AT3G45640.1	21798944
AT4G26750.1	Zm00001d047758_P003	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88310	Sorghum	nucleus	90.68	92.41
Zm00001d045870_P001	Maize	nucleus	90.89	77.7
Os06t0308800-01	Rice	nucleus	78.47	77.66
TraesCS7D01G225200.1	Wheat	cytosol	77.23	76.59
TraesCS7B01G190400.1	Wheat	cytosol	77.23	76.59
TraesCS7A01G223600.1	Wheat	cytosol	75.57	74.95
HORVU7Hr1G045860.5	Barley	cytosol	75.36	74.44
Zm00001d037415_P002	Maize	cytosol	37.89	63.1
GSMUA_Achr3P10980_001	Banana	nucleus	50.31	58.41
Solyc07g064980.2.1	Tomato	nucleus	49.9	57.93
GSMUA_Achr9P12660_001	Banana	nucleus	48.65	56.76
VIT_19s0090g01240.t01	Wine grape	nucleus	49.9	56.57
PGSC0003DMT400057424	Potato	nucleus	48.03	55.64
GSMUA_Achr9P19810_001	Banana	cytosol	50.72	53.73
CDX94288	Canola	cytosol	46.38	53.46
Bra026406.1-P	Field mustard	cytosol	46.17	53.22
CDX89306	Canola	cytosol	46.17	53.22
AT4G26750.1	Thale cress	cytosol	45.96	52.73
KRH73817	Soybean	nucleus	46.58	48.18
KRH14310	Soybean	cytosol	47.62	47.23

Protein Annotations

EnsemblPlants:Zm00001d037417_P002	EnsemblPlants:Zm00001d037417_T002	EnsemblPlantsGene:Zm00001d037417	EntrezGene:100276474	Gene3D:1.20.5.420	Gene3D:1.25.40.270
InterPro:IPR023175	InterPro:VPS_Vta1/CALS_N	PANTHER:PTHR12741	PANTHER:PTHR12741:SF4	PFAM:PF04652	ProteinID:AQK83953.1
SEG:seg	UniParc:UPI0008459376	UniProt:A0A1D6LXS2	MapMan:22.5.4.4.2	:	:

Description

Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5

Coordinates

chr6:-:124924840..124928912

Molecular Weight (calculated)

53431.0 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.888

Length

483 amino acids

Sequence
(BLAST)

001: MGSESEPAKG LLPYLQRADE LQKHEPLVAY YCRLYAMEKG LRIPQKERTK TTNSILISLM NQLEKARAYI WDKKSLTLGP DDNLHLEGFA LNVFVKADKQ
101: DRAGRADINT AKTFYAASIF FEILNQFGEL QPDIEQKQKY AIWKAAEIRK ALKEGRKPEA GPPGGDKDEA PVSTTTISQD MGQSPSFSSV HQGSEASPRP
201: VNMDFSRRDS FSAVQPGNNV PHQSTEFNDH PSTQLPYSPP PPSQSQHPSP SQSYSSPSYQ ATTDYPSSDF HKPSPNYSTP GYTSTDFPTN EVHKPPSNYS
301: PPPYTRTDRP SNDGYNPHSN GKPDVSAYPQ AYQPSPYTFD PQHNSQNYYS TEAPAVPYNY PNFQSYPSFQ DNTSASVLTH QSSFYPESDD PAATSHTPAS
401: NSSVPTHYHP TADCSPQVTP PAAPPASQYR YDSSYQPEVE KIAEAHKAAR FAVGALAFDD VSVAVDHLKR ALDLLTNPSA EPH

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.