Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008596_P005 | |
| Zm00001d028711_P003 | |
| Zm00001d039904_P006 | |
| Zm00001d047758_P003 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037417_P002 | Maize | nucleus | 77.7 | 90.89 |
| Os06t0308800-01 | Rice | nucleus | 68.14 | 78.89 |
| TraesCS7D01G225200.1 | Wheat | cytosol | 66.19 | 76.8 |
| TraesCS7B01G190400.1 | Wheat | cytosol | 66.19 | 76.8 |
| TraesCS7A01G223600.1 | Wheat | cytosol | 64.78 | 75.15 |
| HORVU7Hr1G045860.5 | Barley | cytosol | 64.42 | 74.44 |
| Zm00001d037415_P002 | Maize | cytosol | 31.15 | 60.69 |
| GSMUA_Achr3P10980_001 | Banana | nucleus | 43.89 | 59.62 |
| Solyc07g064980.2.1 | Tomato | nucleus | 42.65 | 57.93 |
| GSMUA_Achr9P12660_001 | Banana | nucleus | 42.3 | 57.73 |
| VIT_19s0090g01240.t01 | Wine grape | nucleus | 42.83 | 56.81 |
| PGSC0003DMT400057424 | Potato | nucleus | 41.24 | 55.88 |
| CDX94288 | Canola | cytosol | 40.18 | 54.18 |
| Bra026406.1-P | Field mustard | cytosol | 40.0 | 53.94 |
| CDX89306 | Canola | cytosol | 40.0 | 53.94 |
| GSMUA_Achr9P19810_001 | Banana | cytosol | 43.19 | 53.51 |
| AT4G26750.1 | Thale cress | cytosol | 39.65 | 53.21 |
| KRH73817 | Soybean | nucleus | 40.35 | 48.82 |
| KRH14310 | Soybean | cytosol | 41.59 | 48.25 |
Protein Annotations
| EnsemblPlants:Zm00001d045870_P001 | EnsemblPlants:Zm00001d045870_T001 | EnsemblPlantsGene:Zm00001d045870 | Gene3D:1.20.5.420 | Gene3D:1.25.40.270 | InterPro:IPR023175 |
| InterPro:VPS_Vta1/CALS_N | PANTHER:PTHR12741 | PANTHER:PTHR12741:SF4 | PFAM:PF04652 | ProteinID:AQL03336.1 | SEG:seg |
| UniParc:UPI000845515A | UniProt:A0A1D6NZK8 | MapMan:22.5.4.4.2 | : | : | : |
Description
Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5
Coordinates
chr9:+:44813409..44820683
Molecular Weight (calculated)
62485.6 Da
IEP (calculated)
7.034
GRAVY (calculated)
-0.897
Length
565 amino acids
Sequence
(BLAST)
(BLAST)
001: MERWEDSVEK RVTTWGASQQ NYHHDRKLLR HLLFPSRRSS SCNDSSPKSA LPLSPPSSPT SGDLSRQIWA VLALGHLRPT MGSESEPAKG LLPYLQRADE
101: LQKHEPLVAY YCRLYAMEKG LRIPQKERTK TTNSILISLM NQLEKARSYI RDKKSLTLGP DDNLHLEGFA LNVFAKADKQ DRAGRADINT AKTFYAASIF
201: FEILNQFGEL QPDIEQKQKY AIWKAAEIRK ALKEGRQPEA GPPGGGKDEA PVNTTTISQD MARSHSFSSA NQGSEASPRP VNMDFSRRGS FSAVQPGNNL
301: PPQSTEFNDH PSTQSPYSSP PPSQSQHPSP SQSYSSPSYQ ATDYPSSDIH KPSPNYSSSP YTSTDYPTNE LHKPPSNYSP PPYTRTDHPS NDGYNPHSND
401: KPDVSAYPQA YQPPPYTIDP QHISQNYYST KAPAAPYNYP NFQSYPSFQD STSPSVPTEP TYQSSFYPAT DGPAATSYTP ASNSSAPTHY HSTADYSPQV
501: TPPAAPPASQ YKYDSSYQPE VEKIAEAHKA ARFAVGALAF DDVSVAVDHL KRALDLLTNP SAEPR
101: LQKHEPLVAY YCRLYAMEKG LRIPQKERTK TTNSILISLM NQLEKARSYI RDKKSLTLGP DDNLHLEGFA LNVFAKADKQ DRAGRADINT AKTFYAASIF
201: FEILNQFGEL QPDIEQKQKY AIWKAAEIRK ALKEGRQPEA GPPGGGKDEA PVNTTTISQD MARSHSFSSA NQGSEASPRP VNMDFSRRGS FSAVQPGNNL
301: PPQSTEFNDH PSTQSPYSSP PPSQSQHPSP SQSYSSPSYQ ATDYPSSDIH KPSPNYSSSP YTSTDYPTNE LHKPPSNYSP PPYTRTDHPS NDGYNPHSND
401: KPDVSAYPQA YQPPPYTIDP QHISQNYYST KAPAAPYNYP NFQSYPSFQD STSPSVPTEP TYQSSFYPAT DGPAATSYTP ASNSSAPTHY HSTADYSPQV
501: TPPAAPPASQ YKYDSSYQPE VEKIAEAHKA ARFAVGALAF DDVSVAVDHL KRALDLLTNP SAEPR
001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H
Arabidopsis Description
LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.