Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26619 | Soybean | nucleus | 99.27 | 93.12 |
| KRH25197 | Soybean | cytosol | 93.64 | 88.25 |
| KRH30451 | Soybean | cytosol | 93.64 | 88.25 |
| VIT_06s0080g00160.t01 | Wine grape | extracellular | 92.42 | 87.3 |
| GSMUA_Achr4P24320_001 | Banana | cytosol | 86.31 | 86.52 |
| CDY31186 | Canola | cytosol | 90.22 | 85.02 |
| CDX93578 | Canola | cytosol | 89.24 | 84.88 |
| AT2G27600.1 | Thale cress | cytosol | 90.22 | 84.83 |
| CDX83275 | Canola | cytosol | 89.73 | 84.76 |
| CDY04504 | Canola | cytosol | 89.49 | 84.72 |
| Bra018640.1-P | Field mustard | cytosol | 89.0 | 84.65 |
| EES00346 | Sorghum | cytosol | 90.22 | 84.63 |
| CDX71438 | Canola | cytosol | 88.75 | 84.62 |
| Bra012009.1-P | Field mustard | cytosol | 89.49 | 84.53 |
| Bra000503.1-P | Field mustard | cytosol | 89.49 | 84.53 |
| GSMUA_Achr2P22550_001 | Banana | cytosol | 85.09 | 84.47 |
| CDX95077 | Canola | cytosol | 88.75 | 84.22 |
| Zm00001d039904_P006 | Maize | cytosol | 89.24 | 83.91 |
| Os01t0141100-02 | Rice | cytosol, plasma membrane | 62.1 | 83.83 |
| GSMUA_Achr3P01430_001 | Banana | cytosol | 84.11 | 83.7 |
| TraesCS3A01G054100.1 | Wheat | cytosol | 87.53 | 81.74 |
| TraesCS3D01G053600.1 | Wheat | cytosol | 87.53 | 81.74 |
| TraesCS3B01G065200.1 | Wheat | cytosol | 87.29 | 81.51 |
| PGSC0003DMT400050194 | Potato | cytosol | 86.55 | 81.38 |
| Solyc11g007170.1.1 | Tomato | cytosol | 79.71 | 80.69 |
| Zm00001d008596_P005 | Maize | cytosol | 89.24 | 80.22 |
| TraesCS6B01G161700.1 | Wheat | cytosol | 73.84 | 69.11 |
| TraesCS6A01G133300.1 | Wheat | cytosol | 73.59 | 68.72 |
| TraesCS6D01G122900.1 | Wheat | cytosol | 73.35 | 68.65 |
| Os02t0159900-01 | Rice | plasma membrane | 72.13 | 68.13 |
| Os01t0141300-00 | Rice | cytosol | 71.88 | 61.51 |
| HORVU3Hr1G010300.1 | Barley | cytosol, plastid | 73.35 | 57.25 |
| KRH08796 | Soybean | cytosol | 16.63 | 39.08 |
| KRH23518 | Soybean | cytosol | 21.27 | 37.99 |
| KRH58481 | Soybean | cytosol | 31.78 | 32.26 |
| KRH42362 | Soybean | cytosol, endoplasmic reticulum | 31.78 | 32.1 |
| KRH09800 | Soybean | cytosol | 33.01 | 28.24 |
| KRH00594 | Soybean | cytosol, plastid | 32.52 | 27.09 |
| KRH40573 | Soybean | cytosol, plastid | 32.03 | 26.95 |
| KRH47511 | Soybean | cytosol | 34.47 | 26.55 |
| KRH44395 | Soybean | cytosol | 34.47 | 26.45 |
| KRH53570 | Soybean | endoplasmic reticulum, plasma membrane | 24.21 | 25.26 |
| KRH64362 | Soybean | endoplasmic reticulum, plasma membrane | 24.21 | 25.26 |
| KRH15897 | Soybean | endoplasmic reticulum | 23.72 | 24.87 |
| KRH08789 | Soybean | cytosol | 19.56 | 23.88 |
| KRG94255 | Soybean | nucleus | 31.54 | 19.58 |
| KRH57680 | Soybean | nucleus | 31.3 | 19.42 |
| KRH57222 | Soybean | cytosol | 22.98 | 14.99 |
| KRH38312 | Soybean | endoplasmic reticulum | 27.38 | 13.71 |
| KRH08780 | Soybean | extracellular, plasma membrane | 27.14 | 13.59 |
| KRH27876 | Soybean | cytosol | 26.65 | 12.99 |
| KRH59989 | Soybean | endoplasmic reticulum | 26.65 | 12.98 |
| KRH77598 | Soybean | endoplasmic reticulum | 26.16 | 12.75 |
| KRG91604 | Soybean | endoplasmic reticulum, plasma membrane | 25.18 | 12.56 |
| KRH35220 | Soybean | endoplasmic reticulum | 24.45 | 12.36 |
| KRH41256 | Soybean | extracellular | 25.67 | 12.31 |
| KRH29161 | Soybean | cytosol, mitochondrion | 24.21 | 9.54 |
| KRH24190 | Soybean | mitochondrion | 24.21 | 9.53 |
| KRH71559 | Soybean | cytosol | 25.43 | 9.4 |
| KRH31895 | Soybean | nucleus | 26.41 | 8.66 |
| KRH31896 | Soybean | nucleus | 25.92 | 8.65 |
| KRH54195 | Soybean | plastid | 25.92 | 8.56 |
| KRH71560 | Soybean | nucleus | 25.92 | 8.53 |
| KRH63756 | Soybean | cytosol, plastid | 25.43 | 8.43 |
| KRH03951 | Soybean | nucleus | 25.18 | 8.42 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:1.20.58.280 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A0R0H530 | InterPro:AAA+_ATPase |
| EMBL:ACUP02008426 | EMBL:ACUP02008427 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlantsGene:GLYMA_13G317300 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 |
| EnsemblPlants:KRH22691 | ProteinID:KRH22691 | ProteinID:KRH22691.1 | InterPro:MIT | InterPro:MIT_dom_sf | InterPro:P-loop_NTPase |
| PFAM:PF00004 | PFAM:PF04212 | PFAM:PF09336 | ScanProsite:PS00674 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF137 |
| SMART:SM00382 | SMART:SM00745 | SUPFAM:SSF116846 | SUPFAM:SSF52540 | UniParc:UPI0006EDAC04 | InterPro:Vps4_C |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:+:41201364..41205903
Molecular Weight (calculated)
45937.7 Da
IEP (calculated)
8.056
GRAVY (calculated)
-0.555
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSNFKEQAI EYVKQAVQED NAGNYAKAFP LYMNALEYFK THLKYEKNPK IKEAITQKFT EYLRRAEEIR AVLDDGGPGP ASNGDAAVAA RPKTKPKDGE
101: GGGDGEDPEQ AKLRAGLNSA IIREKPNVKW NDVAGLESAK QALQEAVILP VKFPQFFTGK RRPWRAFLFV SSSDLVSKWM GESEKLVSNL FEMARESAPS
201: IIFIDEIDSL CGQRGEGNES EASRRIKTEL LVQMQGVGHN DQKVLVLAAT NTPYALDQAI RRRFDKRIYI PLPDLKARQH MFKVHLGDTP HNLTESDFEY
301: LASRTEGFSG SDISVCVKDV LFEPVRKTQD AMFFFKNPEG MWIPCGPKQQ GAVQTSMQEL AAKGLASKIL PPPIRRTDFE KVLARQRPTV SKADLDVHER
401: FTKEFGEEG
101: GGGDGEDPEQ AKLRAGLNSA IIREKPNVKW NDVAGLESAK QALQEAVILP VKFPQFFTGK RRPWRAFLFV SSSDLVSKWM GESEKLVSNL FEMARESAPS
201: IIFIDEIDSL CGQRGEGNES EASRRIKTEL LVQMQGVGHN DQKVLVLAAT NTPYALDQAI RRRFDKRIYI PLPDLKARQH MFKVHLGDTP HNLTESDFEY
301: LASRTEGFSG SDISVCVKDV LFEPVRKTQD AMFFFKNPEG MWIPCGPKQQ GAVQTSMQEL AAKGLASKIL PPPIRRTDFE KVLARQRPTV SKADLDVHER
401: FTKEFGEEG
001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
Arabidopsis Description
SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.