CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91762
KRH05482
KRH22691
KRH25197
KRH26619
KRH30451
KRH35013
KRH44162
KRH47134
KRH70218

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	KRG91762	AT1G71830.1	16621602
AT3G54840.1	KRH35013	AT1G71830.1	16621602
AT3G54840.1	KRH70218	AT1G71830.1	16621602
AT3G54840.1	KRH22691	AT2G27600.1	17468262
AT3G54840.1	KRH25197	AT2G27600.1	17468262
AT3G54840.1	KRH26619	AT2G27600.1	17468262
AT3G54840.1	KRH30451	AT2G27600.1	17468262
AT3G54840.1	KRH05482	AT4G33000.1	17825054
AT3G54840.1	KRH44162	AT4G33000.1	17825054
AT3G54840.1	KRH47134	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91957	Soybean	cytosol	92.2	94.5
VIT_13s0019g04680.t01	Wine grape	cytosol	85.37	87.5
PGSC0003DMT400019238	Potato	cytosol	81.95	84.0
Solyc11g008430.1.1	Tomato	cytosol	81.95	84.0
AT3G54840.1	Thale cress	cytosol	81.95	83.17
Bra014785.1-P	Field mustard	cytosol, plastid	79.51	81.91
GSMUA_Achr1P03160_001	Banana	cytosol	69.76	81.25
CDY55834	Canola	cytosol, plastid	79.51	80.3
TraesCS4D01G267900.1	Wheat	cytosol	65.37	80.24
CDX78272	Canola	cytosol	79.02	79.8
CDY61658	Canola	cytosol	78.54	79.7
TraesCS1A01G140700.1	Wheat	cytosol	58.05	77.78
GSMUA_Achr5P10670_001	Banana	cytosol	72.2	76.68
OQU93218	Sorghum	plastid	74.15	76.0
Os03t0151900-01	Rice	plasma membrane	73.66	75.88
TraesCS4A01G035800.1	Wheat	plastid	71.71	73.87
TraesCS4B01G268600.1	Wheat	plastid	71.71	73.87
TraesCS1B01G157100.1	Wheat	cytosol, plastid	71.71	73.5
TraesCS1D01G139500.1	Wheat	cytosol, plastid	70.73	72.5
Zm00001d048410_P004	Maize	plastid	72.68	70.28
GSMUA_Achr4P29310_001	Banana	plastid	74.63	69.86
Os10t0441800-01	Rice	plasma membrane	74.63	61.2
Bra007104.1-P	Field mustard	endoplasmic reticulum	78.05	57.55
HORVU4Hr1G072020.1	Barley	cytosol	71.22	56.15
KRG98019	Soybean	cytosol	52.68	54.0
CDY02896	Canola	endoplasmic reticulum, golgi	68.78	52.42
KRH23467	Soybean	cytosol	27.8	50.89
KRH09851	Soybean	cytosol, mitochondrion, plastid	48.29	49.5
KRH20053	Soybean	endoplasmic reticulum	52.68	46.35
KRH60288	Soybean	mitochondrion	44.88	46.23
KRH41580	Soybean	cytosol	42.93	45.36
KRH28235	Soybean	cytosol	39.51	39.13
KRH43179	Soybean	cytosol	39.51	39.13
KRH77258	Soybean	endoplasmic reticulum	39.51	39.13
KRH59334	Soybean	endoplasmic reticulum	39.02	38.65
KRG97576	Soybean	cytosol	38.05	37.68
KRH57563	Soybean	cytosol	37.56	37.38
KRH04283	Soybean	cytosol	37.56	37.38
KRH31293	Soybean	cytosol	31.22	35.96
KRH77257	Soybean	endoplasmic reticulum	27.32	31.82
KRH28236	Soybean	cytosol	20.98	9.07

Protein Annotations

EntrezGene:100305769	MapMan:22.8.1.6	Gene3D:3.40.50.300	UniProt:A0A0R0I3Y8	EMBL:ACUP02006634	EnsemblPlantsGene:GLYMA_10G208300
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlants:KRH34819	ProteinID:KRH34819	ProteinID:KRH34819.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF618	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00054A1225	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:44003313..44009610

Molecular Weight (calculated)

22206.3 Da

IEP (calculated)

4.882

GRAVY (calculated)

-0.200

Length

205 amino acids

Sequence
(BLAST)

001: MGCGSSLPDR GSRQLGRPNS ENGGGQDAKN LRVKLVLLGD SGVGKSCIVL RFVRGQFDPT SKVTVGASFL SQTIALQDST TVKFEIWDTA GQERYAALAP
101: LYYRGAAVAV IVYDITSPES FSKAQYWVKE LQKHGSPDIV MALVGNKADL LEKREVAVQD GTDYAEKNGM FFIETSAKTA DNINELFEDI VDYATSKLPN
201: DVLAA

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.