Factsheet for GSMUA_Achr5P10670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P14850_001
GSMUA_Achr2P22550_001
GSMUA_Achr3P01430_001
GSMUA_Achr3P32370_001
GSMUA_Achr4P24320_001
GSMUA_Achr7P11620_001
GSMUA_Achr7P17210_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	GSMUA_Achr10P...	AT1G71830.1	16621602
AT3G54840.1	GSMUA_Achr10P...	AT1G71830.1	16621602
AT3G54840.1	GSMUA_Achr2P14850_001	AT1G71830.1	16621602
AT3G54840.1	GSMUA_Achr7P11620_001	AT1G71830.1	16621602
AT3G54840.1	GSMUA_Achr7P17210_001	AT1G71830.1	16621602
AT3G54840.1	GSMUA_AchrUn_...	AT1G71830.1	16621602
AT3G54840.1	GSMUA_Achr2P22550_001	AT2G27600.1	17468262
AT3G54840.1	GSMUA_Achr3P01430_001	AT2G27600.1	17468262
AT3G54840.1	GSMUA_Achr4P24320_001	AT2G27600.1	17468262
AT3G54840.1	GSMUA_Achr3P32370_001	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03160_001	Banana	cytosol	78.24	85.8
TraesCS4D01G267900.1	Wheat	cytosol	67.88	78.44
VIT_13s0019g04680.t01	Wine grape	cytosol	80.83	78.0
Os03t0151900-01	Rice	plasma membrane	79.27	76.88
OQU93218	Sorghum	plastid	79.27	76.5
TraesCS1A01G140700.1	Wheat	cytosol	59.59	75.16
PGSC0003DMT400019238	Potato	cytosol	77.2	74.5
Solyc11g008430.1.1	Tomato	cytosol	77.2	74.5
TraesCS4B01G268600.1	Wheat	plastid	76.68	74.37
TraesCS4A01G035800.1	Wheat	plastid	76.68	74.37
KRG91957	Soybean	cytosol	76.68	74.0
TraesCS1B01G157100.1	Wheat	cytosol, plastid	76.17	73.5
AT3G54840.1	Thale cress	cytosol	76.68	73.27
TraesCS1D01G139500.1	Wheat	cytosol, plastid	75.65	73.0
Bra014785.1-P	Field mustard	cytosol, plastid	75.13	72.86
GSMUA_Achr4P29310_001	Banana	plastid	82.38	72.6
KRH34819	Soybean	cytosol	76.68	72.2
Zm00001d048410_P004	Maize	plastid	78.24	71.23
CDY61658	Canola	cytosol	74.09	70.79
CDY55834	Canola	cytosol, plastid	73.58	69.95
CDX78272	Canola	cytosol	73.06	69.46
Os10t0441800-01	Rice	plasma membrane	78.76	60.8
HORVU4Hr1G072020.1	Barley	cytosol	76.68	56.92
GSMUA_AchrUn_...	Banana	cytosol	38.86	52.08
Bra007104.1-P	Field mustard	endoplasmic reticulum	72.02	50.0
GSMUA_Achr9P10010_001	Banana	cytosol	52.33	49.27
GSMUA_Achr7P16440_001	Banana	cytosol	49.74	47.52
CDY02896	Canola	endoplasmic reticulum, golgi	64.77	46.47
GSMUA_Achr6P02970_001	Banana	cytosol	46.63	45.0
GSMUA_Achr6P31600_001	Banana	cytosol	46.63	44.12
GSMUA_Achr5P23540_001	Banana	endoplasmic reticulum	48.7	40.52
GSMUA_Achr1P02060_001	Banana	cytosol	49.22	39.75
GSMUA_Achr2P10990_001	Banana	cytosol	48.7	39.0
GSMUA_Achr4P29680_001	Banana	cytosol	47.15	38.89
GSMUA_Achr11P...	Banana	mitochondrion	36.27	33.82
GSMUA_Achr5P12680_001	Banana	plasma membrane	35.75	33.17
GSMUA_AchrUn_...	Banana	cytosol	35.75	33.17
GSMUA_Achr6P10400_001	Banana	cytosol	35.23	32.85
GSMUA_Achr2P22200_001	Banana	cytosol	35.23	32.85
GSMUA_Achr6P32620_001	Banana	mitochondrion	31.61	31.77
GSMUA_Achr1P00610_001	Banana	cytosol	29.02	31.28
GSMUA_AchrUn_...	Banana	cytosol	12.44	25.81

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G10670_001	EnsemblPlants:GSMUA_Achr5P10670_001	EnsemblPlants:GSMUA_Achr5T10670_001
UniProt:M0SXE6	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF618	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296ABC9	:	:	:

Description

Ras-related protein Rab-5C [Source:GMGC_GENE;Acc:GSMUA_Achr5G10670_001]

Coordinates

chr5:-:7634477..7648014

Molecular Weight (calculated)

21299.6 Da

IEP (calculated)

8.065

GRAVY (calculated)

-0.037

Length

193 amino acids

Sequence
(BLAST)

001: MGCSSSFPER HAGRLGSFNN KNLMATDSKC LRVKLVLLGD SGVGKSCIVL RFVRGHFEPT SKVTVGASFL SQTLALQDST SVKFEIWDTA GQERYASLAP
101: LYYRGAAVAL VVYDITSLET FRKAQYWVKE LQKHASPGII MALVGNKADL HESRAISFQD AMEYAEKNGM FFIETSAKTA DNINQLFEVL LEA

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.