Factsheet for GSMUA_Achr1P02060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	51.46	85.42
KRG98019	Soybean	cytosol	69.87	83.5
GSMUA_Achr2P10990_001	Banana	cytosol	79.92	79.25
GSMUA_Achr4P29680_001	Banana	cytosol	77.41	79.06
Solyc02g081380.2.1	Tomato	plastid	65.69	78.5
Solyc02g036450.2.1	Tomato	cytosol, plastid	65.69	78.5
PGSC0003DMT400055259	Potato	cytosol, plastid	65.69	78.5
PGSC0003DMT400050774	Potato	cytosol	65.69	78.5
GSMUA_Achr7P16440_001	Banana	cytosol	61.92	73.27
KRH20053	Soybean	endoplasmic reticulum	69.87	71.67
GSMUA_Achr9P10010_001	Banana	cytosol	61.09	71.22
GSMUA_Achr6P31600_001	Banana	cytosol	56.49	66.18
GSMUA_Achr6P02970_001	Banana	cytosol	53.97	64.5
VIT_04s0079g00760.t01	Wine grape	cytosol	61.51	64.19
GSMUA_AchrUn_...	Banana	cytosol	23.85	61.29
GSMUA_Achr1P03160_001	Banana	cytosol	43.93	59.66
GSMUA_Achr5P23540_001	Banana	endoplasmic reticulum	55.65	57.33
GSMUA_Achr5P10670_001	Banana	cytosol	39.75	49.22
GSMUA_Achr4P29310_001	Banana	plastid	41.0	44.75
GSMUA_Achr2P22200_001	Banana	cytosol	35.15	40.58
GSMUA_AchrUn_...	Banana	cytosol	35.15	40.38
GSMUA_Achr11P...	Banana	mitochondrion	34.31	39.61
GSMUA_Achr5P12680_001	Banana	plasma membrane	34.31	39.42
GSMUA_Achr6P10400_001	Banana	cytosol	33.89	39.13
GSMUA_Achr1P00610_001	Banana	cytosol	28.87	38.55
GSMUA_Achr6P32620_001	Banana	mitochondrion	28.45	35.42

Protein Annotations

MapMan:22.8.1.6	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr1G02060_001	EnsemblPlants:GSMUA_Achr1P02060_001	EnsemblPlants:GSMUA_Achr1T02060_001	UniProt:M0RWB4
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF622
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000295A39D	:	:	:

Description

Ras-related protein Rab5 [Source:GMGC_GENE;Acc:GSMUA_Achr1G02060_001]

Coordinates

chr1:-:1679177..1683265

Molecular Weight (calculated)

26397.8 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.152

Length

239 amino acids

Sequence
(BLAST)

001: MATIGSNSIN AKLVLLGDMG AGKSSLVLRF VKGQFLEFQE STIGAAFFSQ TLAVSDATVK LEIWDTAGQE RYHSLAPMYY RGAAAAIIVY DISRMESFEK
101: AKKWVQELQK QGSPNLVTAL AGNKCDLDDK REVPTEATTT PNCLKMQTFI VCCFLEKMFH VSTLARTARR VTCPKEARTY AEENGLLFME TSAKTAINVN
201: DIFYEIARRL PRAQPAQQPA GMVLADRPTQ RSQTSACCS

Best Arabidopsis Sequence Match ( AT4G19640.1 )
(BLAST)

001: MAAAGNKSIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DVTNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKSDLLDA RKVTAEDAQT YAQENGLFFM ETSAKTATNV KEIFYEIARR LPRVQPTENP TGMVLPDRAM DRAVSSSCCA

Arabidopsis Description

RABF2BRABF2B [Source:UniProtKB/TrEMBL;Acc:A0A178UXV7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.