Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- golgi 3
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG98019 | Soybean | cytosol | 85.84 | 100.0 |
| PGSC0003DMT400055259 | Potato | cytosol, plastid | 78.11 | 91.0 |
| Solyc02g036450.2.1 | Tomato | cytosol, plastid | 77.25 | 90.0 |
| PGSC0003DMT400050774 | Potato | cytosol | 75.97 | 88.5 |
| Solyc02g081380.2.1 | Tomato | plastid | 75.97 | 88.5 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.65 | 86.81 |
| CDX82579 | Canola | cytosol | 70.82 | 82.5 |
| CDY13065 | Canola | cytosol | 70.39 | 82.0 |
| CDY23153 | Canola | cytosol | 70.39 | 82.0 |
| CDY39412 | Canola | cytosol | 70.39 | 82.0 |
| Bra025091.1-P | Field mustard | cytosol | 70.39 | 82.0 |
| Bra027593.1-P | Field mustard | cytosol | 69.53 | 81.41 |
| AT4G19640.1 | Thale cress | cytosol | 68.24 | 79.5 |
| Bra013410.1-P | Field mustard | cytosol | 68.24 | 79.5 |
| CDX78949 | Canola | cytosol | 68.24 | 79.1 |
| Os03t0666500-01 | Rice | plasma membrane | 68.67 | 78.82 |
| CDX99356 | Canola | cytosol | 67.81 | 78.61 |
| TraesCS4A01G294600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 68.67 | 78.05 |
| TraesCS4B01G019100.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 68.67 | 78.05 |
| EER93694 | Sorghum | cytosol | 67.38 | 77.34 |
| Zm00001d013583_P001 | Maize | cytosol | 66.95 | 76.85 |
| Os12t0631100-01 | Rice | plasma membrane | 66.95 | 76.85 |
| HORVU5Hr1G002970.1 | Barley | plastid | 68.24 | 76.08 |
| KXG24102 | Sorghum | cytosol | 66.52 | 75.98 |
| Zm00001d031179_P001 | Maize | extracellular, mitochondrion | 66.52 | 75.98 |
| AT5G45130.2 | Thale cress | endoplasmic reticulum | 67.81 | 75.96 |
| TraesCS5D01G022200.2 | Wheat | golgi | 67.38 | 75.12 |
| TraesCS5B01G014400.1 | Wheat | plastid | 66.95 | 74.64 |
| TraesCS4D01G017300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 68.67 | 74.42 |
| GSMUA_Achr4P29680_001 | Banana | cytosol | 72.53 | 72.22 |
| GSMUA_Achr2P10990_001 | Banana | cytosol | 74.25 | 71.78 |
| VIT_04s0079g00760.t01 | Wine grape | cytosol | 70.39 | 71.62 |
| GSMUA_Achr1P02060_001 | Banana | cytosol | 71.67 | 69.87 |
| KRH60288 | Soybean | mitochondrion | 59.23 | 69.35 |
| KRH41580 | Soybean | cytosol | 55.79 | 67.01 |
| KRH23467 | Soybean | cytosol | 32.19 | 66.96 |
| HORVU4Hr1G002980.2 | Barley | cytosol | 68.67 | 66.95 |
| KRH09851 | Soybean | cytosol, mitochondrion, plastid | 55.79 | 65.0 |
| CDX78945 | Canola | cytosol | 14.16 | 64.71 |
| Zm00001d034949_P001 | Maize | extracellular, mitochondrion | 66.52 | 62.5 |
| Zm00001d036973_P001 | Maize | cytosol | 18.45 | 62.32 |
| KRG91957 | Soybean | cytosol | 47.64 | 55.5 |
| CDY09323 | Canola | extracellular, plastid, vacuole | 27.04 | 55.26 |
| KRH34819 | Soybean | cytosol | 46.35 | 52.68 |
| Zm00001d010555_P001 | Maize | cytosol | 19.31 | 45.0 |
| KRH59334 | Soybean | endoplasmic reticulum | 33.48 | 37.68 |
| KRH43179 | Soybean | cytosol | 33.05 | 37.2 |
| KRH77258 | Soybean | endoplasmic reticulum | 32.62 | 36.72 |
| KRH28235 | Soybean | cytosol | 32.62 | 36.72 |
| KRG97576 | Soybean | cytosol | 32.19 | 36.23 |
| KRH57563 | Soybean | cytosol | 31.76 | 35.92 |
| KRH04283 | Soybean | cytosol | 31.76 | 35.92 |
| KRH31293 | Soybean | cytosol | 26.61 | 34.83 |
| KRH77257 | Soybean | endoplasmic reticulum | 24.46 | 32.39 |
| KRH28236 | Soybean | cytosol | 18.03 | 8.86 |
Protein Annotations
| EntrezGene:100791620 | EntrezGene:100810011 | MapMan:22.8.1.6 | Gene3D:3.40.50.300 | EMBL:ACUP02008232 | EnsemblPlantsGene:GLYMA_13G153000 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0016787 |
| GO:GO:0030139 | UniProt:I1LM66 | EnsemblPlants:KRH20053 | ProteinID:KRH20053 | ProteinID:KRH20053.1 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF622 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase |
| TIGRFAMs:TIGR00231 | TMHMM:TMhelix | UniParc:UPI00023CD022 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr13:-:26778656..26784463
Molecular Weight (calculated)
25621.6 Da
IEP (calculated)
7.383
GRAVY (calculated)
-0.049
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MATIGHNNLN AKLVGPSSLF SISFCFFFLS QSFSIPMMFS PCSFHQVLLG DMGAGKSSLV LRFVKGQFLE FQESTIGAAF FSQTLAVNDA TVKFEIWDTA
101: GQERYHSLAP MYYRGAAAAI IVYDITSSDS FTRAKKWVQE LQKQGNPNMV MALAGNKADL EDKRKVTAEE ARVYAEENGL FFMETSAKTA SNVNDIFYEI
201: AKRLPRAQPA QNPAGMVLVD RPAEGTRAAS CCS
101: GQERYHSLAP MYYRGAAAAI IVYDITSSDS FTRAKKWVQE LQKQGNPNMV MALAGNKADL EDKRKVTAEE ARVYAEENGL FFMETSAKTA SNVNDIFYEI
201: AKRLPRAQPA QNPAGMVLVD RPAEGTRAAS CCS
001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA
Arabidopsis Description
ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.