Factsheet for Zm00001d013583_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008596_P005
Zm00001d039904_P006
Zm00001d044285_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	Zm00001d008596_P005	AT2G27600.1	17468262
AT4G19640.1	Zm00001d039904_P006	AT2G27600.1	17468262
AT4G19640.1	Zm00001d044285_P003	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93694	Sorghum	cytosol	97.54	97.54
Zm00001d031179_P001	Maize	extracellular, mitochondrion	92.12	91.67
Os03t0666500-01	Rice	plasma membrane	91.63	91.63
TraesCS4A01G294600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	90.15	89.27
TraesCS4B01G019100.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	90.15	89.27
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	90.15	85.12
Zm00001d036973_P001	Maize	cytosol	28.08	82.61
GSMUA_Achr7P16440_001	Banana	cytosol	80.79	81.19
Solyc02g069370.2.1	Tomato	plastid	79.8	81.0
CDY23153	Canola	cytosol	79.31	80.5
Bra027593.1-P	Field mustard	cytosol	78.82	80.4
CDY13065	Canola	cytosol	78.82	80.0
CDX82579	Canola	cytosol	78.33	79.5
GSMUA_Achr9P10010_001	Banana	cytosol	79.8	79.02
CDY39412	Canola	cytosol	77.83	79.0
Bra025091.1-P	Field mustard	cytosol	77.83	79.0
AT4G19640.1	Thale cress	cytosol	77.34	78.5
Bra013410.1-P	Field mustard	cytosol	76.85	78.0
KRG98019	Soybean	cytosol	76.85	78.0
CDX78949	Canola	cytosol	76.85	77.61
CDX99356	Canola	cytosol	76.85	77.61
Zm00001d034949_P001	Maize	extracellular, mitochondrion	93.6	76.61
HORVU4Hr1G002980.2	Barley	cytosol	90.15	76.57
PGSC0003DMT400050774	Potato	cytosol	73.89	75.0
AT5G45130.2	Thale cress	endoplasmic reticulum	76.35	74.52
PGSC0003DMT400055259	Potato	cytosol, plastid	72.41	73.5
GSMUA_Achr6P31600_001	Banana	cytosol	71.92	71.57
KRH20053	Soybean	endoplasmic reticulum	76.85	66.95
VIT_04s0079g00760.t01	Wine grape	cytosol	68.47	60.7
CDX78945	Canola	cytosol	14.29	56.86
CDY09323	Canola	extracellular, plastid, vacuole	28.57	50.88
Zm00001d010555_P001	Maize	cytosol	24.63	50.0
Zm00001d048410_P004	Maize	plastid	49.75	47.64
Zm00001d006905_P001	Maize	mitochondrion	38.42	37.32
Zm00001d006433_P001	Maize	plasma membrane	36.95	36.06
Zm00001d028012_P001	Maize	cytosol, extracellular	32.51	29.73
Zm00001d021551_P002	Maize	cytosol	36.95	29.53
Zm00001d024612_P011	Maize	mitochondrion	22.66	15.97

Protein Annotations

EntrezGene:100193933	MapMan:22.8.1.6	Gene3D:3.40.50.300	ProteinID:AQK63897.1	ProteinID:AQK63898.1	UniProt:B4F7V6
EMBL:BT033194	EMBL:EU966300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00017B5FAB
EnsemblPlantsGene:Zm00001d013583	EnsemblPlants:Zm00001d013583_P001	EnsemblPlants:Zm00001d013583_T001	:	:	:

Description

Ras-related protein RABF2a

Coordinates

chr5:-:14852172..14857086

Molecular Weight (calculated)

22079.2 Da

IEP (calculated)

8.179

GRAVY (calculated)

-0.193

Length

203 amino acids

Sequence
(BLAST)

001: MAANAGNKIR NAKLVLLGDV GAGKSSLVLR FVKGQFVEFQ ESTIGAAFFS QTLAVNDETV KFEIWDTAGQ ERYHSLAPMY YRGAAAAIVV YDITNPASFT
101: RAKKWVQELQ AQGNQNTIVA LAGNKADMLD ARQVPAEEAK AYAQENGLFF METSAKTAIN VNDIFYEIAK KLLQGQQAPS PQAGMVLNQR PNERTVSSSS
201: CCS

Best Arabidopsis Sequence Match ( AT5G45130.1 )
(BLAST)

001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA

Arabidopsis Description

ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.