Factsheet for Zm00001d006905_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97564	Sorghum	cytosol	98.56	98.56
Solyc05g051570.2.1	Tomato	nucleus	89.47	90.34
GSMUA_Achr2P22200_001	Banana	cytosol	89.47	90.34
PGSC0003DMT400018619	Potato	cytosol	89.0	89.86
GSMUA_Achr6P10400_001	Banana	cytosol	88.52	89.37
Zm00001d006433_P001	Maize	plasma membrane	88.52	88.94
Solyc03g078570.2.1	Tomato	cytosol	87.08	87.92
PGSC0003DMT400056111	Potato	cytosol	87.08	87.92
AT5G10260.1	Thale cress	cytosol	86.6	87.44
Bra038535.1-P	Field mustard	cytosol	86.6	87.44
CDY13772	Canola	cytosol	86.6	87.44
KRH59334	Soybean	endoplasmic reticulum	86.12	86.96
AT2G22290.1	Thale cress	cytosol	85.65	86.47
KRG97576	Soybean	cytosol	85.65	86.47
KRH43179	Soybean	cytosol	85.17	85.99
VIT_00s0665g00040.t01	Wine grape	extracellular	72.73	85.39
KRH31293	Soybean	cytosol	72.73	85.39
CDX96987	Canola	cytosol	83.73	84.95
CDX81166	Canola	cytosol	83.73	84.54
CDX78373	Canola	cytosol	83.73	84.54
Bra006054.1-P	Field mustard	cytosol	83.73	84.54
CDX69850	Canola	cytosol	82.78	83.98
Bra009046.1-P	Field mustard	cytosol	82.78	83.98
Zm00001d021551_P002	Maize	cytosol	89.0	73.23
CDX76936	Canola	cytosol	81.34	61.82
Zm00001d028012_P001	Maize	cytosol, extracellular	65.07	61.26
Zm00001d013583_P001	Maize	cytosol	37.32	38.42
Zm00001d031179_P001	Maize	extracellular, mitochondrion	37.32	38.24
Zm00001d048410_P004	Maize	plastid	35.41	34.91
Zm00001d034949_P001	Maize	extracellular, mitochondrion	36.84	31.05
Zm00001d024612_P011	Maize	mitochondrion	38.76	28.12
Zm00001d010555_P001	Maize	cytosol	11.96	25.0
Zm00001d036973_P001	Maize	cytosol	8.13	24.64

Protein Annotations

EntrezGene:103647867	MapMan:22.8.1.8	Gene3D:3.40.50.300	UniProt:A0A1D6F1Y3	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	ProteinID:ONM25443.1
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF475
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000220D711	EnsemblPlantsGene:Zm00001d006905	EnsemblPlants:Zm00001d006905_P001	EnsemblPlants:Zm00001d006905_T001
SEG:seg	:	:	:	:	:

Description

Ras-related protein RABH1e

Coordinates

chr2:+:219137890..219140587

Molecular Weight (calculated)

23234.7 Da

IEP (calculated)

6.725

GRAVY (calculated)

-0.224

Length

209 amino acids

Sequence
(BLAST)

001: MAPAVVSALA KYKLVFLGDQ SVGKTSIITR FMYDKFDTTY QATIGIDFLS KTMYLEDRTV RLQLWDTAGQ ERFRSLIPSY IRDSSVAVVV YDVSNRQSFL
101: NTSKWIDEVR TERGGDVIIV LVGNKTDLVD KRQVSTEEGE SKAKELNVMF IETSAKAGFN IKPLFRKIAA ALPGMETLSA KQEDMVDVNL KSTSSQSNSQ
201: QQEGSGCAC

Best Arabidopsis Sequence Match ( AT2G22290.1 )
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVVVYD VANRLSFLNT
101: SKWIEEVRNE RAGDVIIVLV GNKTDLVEKR QVSIEEGDSK GREYGVMFIE TSAKAGFNIK PLFRKIAAAL PGMESYSNTK NEDMVDVNLK PTSNSSQGDQ
201: QGGACSC

Arabidopsis Description

RABH1DRas-related protein RABH1d [Source:UniProtKB/Swiss-Prot;Acc:Q9SID8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.