Factsheet for Zm00001d048410_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008596_P005
Zm00001d016928_P010
Zm00001d024430_P002
Zm00001d025580_P001
Zm00001d039904_P006
Zm00001d044285_P003
Zm00001d049480_P005
Zm00001d050868_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	Zm00001d016928_P010	AT1G71830.1	16621602
AT3G54840.1	Zm00001d024430_P002	AT1G71830.1	16621602
AT3G54840.1	Zm00001d025580_P001	AT1G71830.1	16621602
AT3G54840.1	Zm00001d049480_P005	AT1G71830.1	16621602
AT3G54840.1	Zm00001d050868_P004	AT1G71830.1	16621602
AT3G54840.1	Zm00001d008596_P005	AT2G27600.1	17468262
AT3G54840.1	Zm00001d039904_P006	AT2G27600.1	17468262
AT3G54840.1	Zm00001d044285_P003	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93218	Sorghum	plastid	89.15	94.5
Os03t0151900-01	Rice	plasma membrane	83.49	88.94
TraesCS4D01G267900.1	Wheat	cytosol	68.87	87.43
TraesCS4B01G268600.1	Wheat	plastid	80.66	85.93
TraesCS4A01G035800.1	Wheat	plastid	80.66	85.93
GSMUA_Achr1P03160_001	Banana	cytosol	69.34	83.52
VIT_13s0019g04680.t01	Wine grape	cytosol	75.47	80.0
GSMUA_Achr5P10670_001	Banana	cytosol	71.23	78.24
KRG91957	Soybean	cytosol	72.17	76.5
Solyc11g008430.1.1	Tomato	cytosol	71.7	76.0
PGSC0003DMT400019238	Potato	cytosol	71.7	76.0
Bra014785.1-P	Field mustard	cytosol, plastid	70.75	75.38
AT3G54840.1	Thale cress	cytosol	71.23	74.75
CDY61658	Canola	cytosol	70.28	73.76
CDY55834	Canola	cytosol, plastid	70.28	73.4
CDX78272	Canola	cytosol	69.81	72.91
KRH34819	Soybean	cytosol	70.28	72.68
GSMUA_Achr4P29310_001	Banana	plastid	72.64	70.32
HORVU4Hr1G072020.1	Barley	cytosol	79.25	64.62
Bra007104.1-P	Field mustard	endoplasmic reticulum	68.87	52.52
Zm00001d031179_P001	Maize	extracellular, mitochondrion	49.06	50.98
Zm00001d013583_P001	Maize	cytosol	47.64	49.75
CDY02896	Canola	endoplasmic reticulum, golgi	60.85	47.96
Zm00001d034949_P001	Maize	extracellular, mitochondrion	47.64	40.73
Zm00001d006433_P001	Maize	plasma membrane	34.91	35.58
Zm00001d006905_P001	Maize	mitochondrion	34.91	35.41
Zm00001d021551_P002	Maize	cytosol	34.91	29.13
Zm00001d010555_P001	Maize	cytosol	13.68	29.0
Zm00001d036973_P001	Maize	cytosol	9.43	28.99
Zm00001d028012_P001	Maize	cytosol, extracellular	27.83	26.58
Zm00001d024612_P011	Maize	mitochondrion	16.04	11.81

Protein Annotations

EntrezGene:100282900	MapMan:22.8.1.6	Gene3D:3.40.50.300	UniProt:A0A1D6PJZ9	ProteinID:AQL09608.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005769	GO:GO:0005829
GO:GO:0006810	GO:GO:0008150	GO:GO:0010009	GO:GO:0016020	GO:GO:0016787	GO:GO:0045022
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF618
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000842BA83	EnsemblPlantsGene:Zm00001d048410	EnsemblPlants:Zm00001d048410_P004	EnsemblPlants:Zm00001d048410_T004

Description

Ras-related protein RABF1

Coordinates

chr9:-:155786150..155792966

Molecular Weight (calculated)

23132.4 Da

IEP (calculated)

7.146

GRAVY (calculated)

-0.150

Length

212 amino acids

Sequence
(BLAST)

001: MGCSSSVPAR NTGGLNTISN DSSPDASSKD LRAKLVLLGD SGVGKSCIVL RFVRGQFDPT SKVTVGASFL SQTLALEDST IVKFEIWDTA GQERYAALAP
101: LYYRGAAAAI VVYDITSPES FSKAQYWVKE LQKHGSPGIV MVLVGNKADL HDNRSVSSQD AQDYAEKNNM FFIETSAKTA DNINQLFEVC FECMKCLFYI
201: TCKRRSNSSC NC

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.