Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G268600.1 | Wheat | plastid | 99.4 | 83.42 |
| TraesCS4A01G035800.1 | Wheat | plastid | 99.4 | 83.42 |
| GSMUA_Achr1P03160_001 | Banana | cytosol | 85.63 | 81.25 |
| Os03t0151900-01 | Rice | plasma membrane | 92.81 | 77.89 |
| OQU93218 | Sorghum | plastid | 91.62 | 76.5 |
| VIT_13s0019g04680.t01 | Wine grape | cytosol | 86.23 | 72.0 |
| PGSC0003DMT400019238 | Potato | cytosol | 85.03 | 71.0 |
| Solyc11g008430.1.1 | Tomato | cytosol | 84.43 | 70.5 |
| KRG91957 | Soybean | cytosol | 83.83 | 70.0 |
| Zm00001d048410_P004 | Maize | plastid | 87.43 | 68.87 |
| Bra014785.1-P | Field mustard | cytosol, plastid | 82.04 | 68.84 |
| AT3G54840.1 | Thale cress | cytosol | 83.23 | 68.81 |
| TraesCS1D01G139500.1 | Wheat | cytosol, plastid | 82.04 | 68.5 |
| GSMUA_Achr5P10670_001 | Banana | cytosol | 78.44 | 67.88 |
| CDY55834 | Canola | cytosol, plastid | 82.04 | 67.49 |
| CDY61658 | Canola | cytosol | 81.44 | 67.33 |
| CDX78272 | Canola | cytosol | 81.44 | 67.0 |
| KRH34819 | Soybean | cytosol | 80.24 | 65.37 |
| HORVU4Hr1G072020.1 | Barley | cytosol | 98.2 | 63.08 |
| GSMUA_Achr4P29310_001 | Banana | plastid | 80.24 | 61.19 |
| Bra007104.1-P | Field mustard | endoplasmic reticulum | 81.44 | 48.92 |
| TraesCS5D01G022200.2 | Wheat | golgi | 60.48 | 48.33 |
| TraesCS4D01G017300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 59.88 | 46.51 |
| TraesCS7D01G433800.1 | Wheat | cytosol | 56.29 | 45.19 |
| CDY02896 | Canola | endoplasmic reticulum, golgi | 69.46 | 43.12 |
| TraesCS4D01G305100.1 | Wheat | cytosol | 43.71 | 34.11 |
| TraesCS2D01G234600.1 | Wheat | plastid | 41.92 | 33.65 |
Protein Annotations
| MapMan:22.8.1.6 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF618 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS4D01G267900 |
| EnsemblPlants:TraesCS4D01G267900.1 | TIGR:cd01860 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4D:-:439121790..439124605
Molecular Weight (calculated)
18338.9 Da
IEP (calculated)
6.535
GRAVY (calculated)
-0.122
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVLLGDSGV GKSCIVLRFV RGQFDPTSKV TVGASFLSQT LALEDSTIVK FEIWDTAGQE RYAALAPLYY RGAAAAVVVY DITSPESFKK AQYWVKELQK
101: HGSPGIVMVL VGNKADLHES RSVPSQEAQE YAEKNSMLFM ETSAKTSDNI NQVFEEIAKR LPKPTAS
101: HGSPGIVMVL VGNKADLHES RSVPSQEAQE YAEKNSMLFM ETSAKTSDNI NQVFEEIAKR LPKPTAS
001: MLVLLGDSGV GKSCIVLRFV RGQFDATSKV TVGASFLSQT IALQDSTTVK FEIWDTAGQE RYSALAPLYY RGAGVAVIVY DITSPESFKK AQYWVKELQK
101: HGSPDIVMAL VGNKADLHEK REVPTEDGME LAEKNGMFFI ETSAKTADNI NQLFEEIGKR LPRPAPSS
101: HGSPDIVMAL VGNKADLHEK REVPTEDGME LAEKNGMFFI ETSAKTADNI NQLFEEIGKR LPRPAPSS
Arabidopsis Description
RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.