Factsheet for Os03t0151900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0141100-02
Os01t0141300-00
Os01t0579600-01
Os01t0711500-00
Os02t0159900-01
Os04t0457800-01
Os06t0225300-01
Os08t0174700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	Os04t0457800-01	AT1G71830.1	16621602
AT3G54840.1	Os06t0225300-01	AT1G71830.1	16621602
AT3G54840.1	Os08t0174700-01	AT1G71830.1	16621602
AT3G54840.1	Os01t0141100-02	AT2G27600.1	17468262
AT3G54840.1	Os01t0141300-00	AT2G27600.1	17468262
AT3G54840.1	Os02t0159900-01	AT2G27600.1	17468262
AT3G54840.1	Os01t0579600-01	AT4G33000.1	17825054
AT3G54840.1	Os01t0711500-00	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93218	Sorghum	plastid	94.47	94.0
TraesCS4D01G267900.1	Wheat	cytosol	77.89	92.81
TraesCS4A01G035800.1	Wheat	plastid	91.46	91.46
TraesCS4B01G268600.1	Wheat	plastid	91.46	91.46
GSMUA_Achr1P03160_001	Banana	cytosol	75.88	85.8
Zm00001d048410_P004	Maize	plastid	88.94	83.49
VIT_13s0019g04680.t01	Wine grape	cytosol	82.41	82.0
PGSC0003DMT400019238	Potato	cytosol	79.9	79.5
GSMUA_Achr5P10670_001	Banana	cytosol	76.88	79.27
Solyc11g008430.1.1	Tomato	cytosol	79.4	79.0
KRG91957	Soybean	cytosol	79.4	79.0
Bra014785.1-P	Field mustard	cytosol, plastid	77.39	77.39
AT3G54840.1	Thale cress	cytosol	77.89	76.73
CDY61658	Canola	cytosol	76.88	75.74
CDY55834	Canola	cytosol, plastid	76.88	75.37
CDX78272	Canola	cytosol	76.38	74.88
KRH34819	Soybean	cytosol	75.88	73.66
GSMUA_Achr4P29310_001	Banana	plastid	77.89	70.78
HORVU4Hr1G072020.1	Barley	cytosol	90.45	69.23
Os10t0441800-01	Rice	plasma membrane	86.43	68.8
Bra007104.1-P	Field mustard	endoplasmic reticulum	75.38	53.96
Os12t0631100-01	Rice	plasma membrane	53.27	52.22
Os03t0666500-01	Rice	plasma membrane	52.26	51.23
CDY02896	Canola	endoplasmic reticulum, golgi	66.83	49.44
Os06t0687100-01	Rice	cytosol	46.73	46.5
Os07t0496000-01	Rice	plasma membrane	38.69	37.02
Os05t0341600-01	Rice	cytosol, plastid	39.2	36.79
Os03t0191400-01	Rice	plasma membrane	37.69	34.88

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	EntrezGene:4331646	ProteinID:ABF94018.1	EMBL:AK105389	EMBL:AK121527
ProteinID:BAF10902.1	ProteinID:BAS82335.1	ProteinID:EEE58334.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:Os03g0151900	EnsemblPlants:Os03t0151900-01
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF618
UniProt:Q10RN9	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00000A115B	RefSeq:XP_015628467.1	SEG:seg

Description

small GTP-binding protein OsRab5A1Similar to Small GTP-binding protein. (Os03t0151900-01);Similar to Small GTP-binding protein. (Os03t0151900-02)

Coordinates

chr3:-:2857196..2860218

Molecular Weight (calculated)

21649.5 Da

IEP (calculated)

6.270

GRAVY (calculated)

-0.246

Length

199 amino acids

Sequence
(BLAST)

001: MGCSSSVPAR STGGLNNISN DNSATDSKDL RAKLVLLGDS GVGKSCIVLR FVRGQFDPTS KVTVGASFLS QTLALEDSTI VKFEIWDTAG QERYAALAPL
101: YYRGAAAAVV VYDITSPESF SKAQYWVKEL QKHGSPDIIM VLVGNKADLH ENRHVSSQEA QEYAEKNNMV FIETSAKTAD NINQVFEEIA KRLPRPTAS

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.