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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • cytosol 1
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 6
  • golgi 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 18260611
plasma membrane: 18557835
plasma membrane: 19502382
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0718300-01
Os01t0891300-01
Os01t0891601-01
Os01t0891700-01
Os01t0892300-01
Os03t0151800-02
Os03t0151900-01
Os04t0457800-01
Os05t0414700-01
Os06t0225300-01
Os08t0174700-01
Os09t0509700-01
Os10t0441800-01
Os10t0442600-01
Os11t0249900-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34210.1 Os01t0891300-01 AT5G48380.1 19616764
AT1G34210.1 Os01t0891601-01 AT5G48380.1 19616764
AT1G34210.1 Os01t0891700-01 AT5G48380.1 19616764
AT1G34210.1 Os01t0892300-01 AT5G48380.1 19616764
AT1G34210.1 Os05t0414700-01 AT5G48380.1 19616764
AT1G34210.1 Os11t0249900-01 AT5G48380.1 19616764
AT1G71830.1 Os04t0457800-01 AT1G71830.1 11397085
AT1G71830.1 Os06t0225300-01 AT1G71830.1 11397085
AT1G71830.1 Os08t0174700-01 AT1G71830.1 11397085
AT1G71830.1 Os04t0457800-01 AT1G71830.1 16621602
AT1G71830.1 Os06t0225300-01 AT1G71830.1 16621602
AT1G71830.1 Os08t0174700-01 AT1G71830.1 16621602
AT1G71830.1 Os09t0509700-01 AT2G33500.1 16473966
AT1G71830.1 Os03t0151800-02 AT3G09840.1 15592873
AT1G71830.1 Os10t0442600-01 AT3G09840.1 15592873
AT1G71830.1 Os03t0151800-02 AT3G09840.1 16473966
AT1G71830.1 Os10t0442600-01 AT3G09840.1 16473966
AT1G71830.1 Os03t0151800-02 AT3G09840.1 16621602
AT1G71830.1 Os10t0442600-01 AT3G09840.1 16621602
AT1G71830.1 Os03t0151800-02 AT3G09840.1 17693538
AT1G71830.1 Os10t0442600-01 AT3G09840.1 17693538
AT1G71830.1 Os03t0151900-01 AT3G54840.1 16621602
AT1G71830.1 Os10t0441800-01 AT3G54840.1 16621602
AT1G71830.1 Os01t0718300-01 AT4G39400.1 16473966
AT2G13790.1 Os01t0718300-01 AT4G39400.1 17600708
AT2G13790.1 Os01t0891300-01 AT5G48380.1 19616764
AT2G13790.1 Os01t0891601-01 AT5G48380.1 19616764
AT2G13790.1 Os01t0891700-01 AT5G48380.1 19616764
AT2G13790.1 Os01t0892300-01 AT5G48380.1 19616764
AT2G13790.1 Os05t0414700-01 AT5G48380.1 19616764
AT2G13790.1 Os11t0249900-01 AT5G48380.1 19616764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G321400.1 Wheat mitochondrion 91.72 91.87
TraesCS2B01G340700.1 Wheat plasma membrane 91.4 91.55
TraesCS2A01G343100.1 Wheat mitochondrion, plasma membrane 91.24 91.39
Zm00001d025580_P001 Maize plasma membrane 88.22 89.07
EES12285 Sorghum plasma membrane 88.06 88.91
Os08t0174700-01 Rice plasma membrane 87.42 87.98
GSMUA_Achr7P17210_001 Banana cytosol 68.79 87.63
GSMUA_Achr2P14850_001 Banana plastid 85.67 86.08
VIT_07s0031g01410.t01 Wine grape plasma membrane 85.19 85.74
KRG91762 Soybean plasma membrane 85.03 85.58
KRH35013 Soybean plasma membrane 84.87 85.42
VIT_18s0164g00070.t01 Wine grape plasma membrane 84.71 85.26
GSMUA_AchrUn_... Banana plasma membrane 85.03 84.76
KRH70218 Soybean endoplasmic reticulum 83.92 84.46
GSMUA_Achr7P11620_001 Banana plasma membrane 86.31 84.29
Solyc04g072570.2.1 Tomato extracellular 84.08 83.94
GSMUA_Achr10P... Banana plasma membrane 83.44 83.71
CDY36679 Canola plasma membrane 82.48 83.41
Bra003911.1-P Field mustard plasma membrane 75.64 83.19
PGSC0003DMT400032797 Potato cytosol, plasma membrane, plastid 68.31 82.82
CDX96350 Canola plasma membrane 82.32 82.72
AT1G34210.1 Thale cress plasma membrane 82.64 82.64
CDX72833 Canola plasma membrane 82.17 82.56
AT1G71830.1 Thale cress plasma membrane 81.69 82.08
KRH10503 Soybean cytosol, plastid 60.67 81.41
PGSC0003DMT400045607 Potato cytosol, plasma membrane, plastid 67.83 81.14
HORVU2Hr1G080020.6 Barley cytosol 91.08 80.79
Bra037006.1-P Field mustard mitochondrion 61.47 80.58
Solyc01g104970.2.1 Tomato plasma membrane 78.98 80.52
PGSC0003DMT400070819 Potato plasma membrane 81.05 80.28
Bra016112.1-P Field mustard plasma membrane 76.43 79.08
Solyc10g047140.1.1 Tomato plasma membrane 77.39 79.02
CDY46116 Canola plasma membrane 75.48 78.61
CDX72403 Canola plasma membrane 75.16 78.28
VIT_12s0055g01160.t01 Wine grape plasma membrane 75.96 78.2
KRH43924 Soybean plasma membrane 76.43 77.92
CDX68975 Canola plasma membrane 75.96 77.56
Bra011439.1-P Field mustard plasma membrane 64.17 77.5
CDX75351 Canola plasma membrane 75.96 77.44
CDY45042 Canola plasma membrane 75.16 77.12
Bra034562.1-P Field mustard plasma membrane 69.43 77.03
VIT_12s0055g01280.t01 Wine grape plasma membrane 62.42 76.41
GSMUA_Achr10P... Banana mitochondrion 87.58 75.86
AT4G33430.2 Thale cress plasma membrane 77.39 73.41
AT2G13790.1 Thale cress plasma membrane 72.13 73.06
CDY28301 Canola plasma membrane 45.86 72.54
KRH58311 Soybean plasma membrane 70.86 71.66
Bra032128.1-P Field mustard cytosol 54.94 70.84
CDX68299 Canola plasma membrane 79.46 70.38
CDX89615 Canola plasma membrane 68.31 70.33
CDX93126 Canola plasma membrane 68.15 70.16
AT2G13800.3 Thale cress plasma membrane 66.72 69.72
CDY48450 Canola plasma membrane 67.2 68.95
Bra041056.1-P Field mustard plasma membrane 56.69 68.86
VIT_12s0055g01150.t01 Wine grape plasma membrane 65.45 67.6
Bra032125.1-P Field mustard plasma membrane 57.32 67.04
CDX71165 Canola plasma membrane 64.81 65.86
CDY39690 Canola cytosol 63.22 65.4
KRH42193 Soybean plasma membrane 64.01 65.26
KRH58312 Soybean plasma membrane 62.9 64.23
Bra013136.1-P Field mustard plasma membrane 54.62 59.34
Os06t0225300-01 Rice plasma membrane 57.48 58.6
Os02t0283800-01 Rice plasma membrane 51.59 53.38
VIT_12s0121g00310.t01 Wine grape cytosol, mitochondrion 25.0 52.86
Os01t0171000-01 Rice plasma membrane 51.43 51.43
Os06t0274500-01 Rice extracellular 50.8 49.84
Os11t0607200-01 Rice plasma membrane 46.34 47.86
Os02t0236100-01 Rice plasma membrane 46.97 47.58
Os08t0442700-01 Rice plasma membrane 50.48 46.76
Os02t0728500-01 Rice extracellular, plasma membrane 17.99 34.88
Os01t0247500-01 Rice golgi, plasma membrane 19.27 34.57
Os12t0638100-01 Rice plasma membrane 32.96 32.96
Os03t0266800-01 Rice plasma membrane 31.05 32.83
Protein Annotations
KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1KEGG:04714+2.7.11.1KEGG:04926+2.7.11.1KEGG:05165+2.7.11.1Gene3D:1.10.510.10
MapMan:11.3.2.1.2MapMan:18.4.1.2Gene3D:3.30.200.20Gene3D:3.80.10.10EntrezGene:4336035PDB:4Q3G
PDB:4Q3IEMBL:AY652735ProteinID:BAF14889.1ProteinID:BAS89517.1ProteinID:CAD40895.1ProteinID:EAZ30959.1
GO:GO:0000003GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674
GO:GO:0004675GO:GO:0004713GO:GO:0004871GO:GO:0005102GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006464GO:GO:0006468
GO:GO:0006950GO:GO:0006952GO:GO:0007154GO:GO:0007165GO:GO:0007166GO:GO:0007178
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009605GO:GO:0009607GO:GO:0009719
GO:GO:0009742GO:GO:0009790GO:GO:0009791GO:GO:0009987GO:GO:0010262GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0018108GO:GO:0019538
GO:GO:0030154GO:GO:0038023GO:GO:0040007GO:GO:0040008GO:GO:0045089GO:GO:1900150
InterPro:IPR000719InterPro:IPR001611InterPro:IPR032675InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sf
InterPro:Leu-rich_rptEnsemblPlantsGene:Os04g0457800EnsemblPlants:Os04t0457800-01PFAM:PF00069PFAM:PF00560PFAM:PF08263
PFAM:PF13855ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27001PANTHER:PTHR27001:SF494
InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSUniProt:Q7XV05InterPro:SERKSMART:SM00220SUPFAM:SSF52058
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00001B1D76RefSeq:XP_015636497.1
SEG:seg:::::
Description
somatic embryogenesis receptor-like kinase 2, somatic embryogenesis receptor kinase 2, bri1-associated receptor kinase 1 (BAK1) homologue 2Similar to SERK1 (Fragment). (Os04t0457800-01);Similar to H0523F07.15 protein. (Os04t0457800-02)
Coordinates
chr4:-:22867479..22872511
Molecular Weight (calculated)
69591.5 Da
IEP (calculated)
6.310
GRAVY (calculated)
-0.212
Length
628 amino acids
Sequence
(BLAST)
001: MAEARLLRRR RLCLAVPFVW VVAVAVSRVG ANTEGDALYS LRQSLKDANN VLQSWDPTLV NPCTWFHVTC NPDNSVIRVD LGNAQLSGAL VPQLGQLKNL
101: QYLELYSNNI SGTIPNELGN LTNLVSLDLY LNNFTGFIPE TLGQLYKLRF LRLNNNSLSG SIPKSLTNIT TLQVLDLSNN NLSGEVPSTG SFSLFTPISF
201: ANNKDLCGPG TTKPCPGAPP FSPPPPFNPP TPTVSQGDSK TGAIAGGVAA AAALLFAVPA IGFAWWRRRK PEEHFFDVPA EEDPEVHLGQ LKRFSLRELQ
301: VATDNFSNKN ILGRGGFGKV YKGRLADGSL VAVKRLKEER TPGGELQFQT EVEMISMAVH RNLLRLRGFC MTPTERLLVY PYMANGSVAS RLRERQPNDP
401: PLEWQTRTRI ALGSARGLSY LHDHCDPKII HRDVKAANIL LDEDFEAVVG DFGLAKLMDY KDTHVTTAVR GTIGHIAPEY LSTGKSSEKT DVFGYGIMLL
501: ELITGQRAFD LARLANDDDV MLLDWVKGLL KEKKVEMLVD PDLQSGFVEH EVESLIQVAL LCTQGSPMDR PKMSEVVRML EGDGLAERWE EWQKVEVVRQ
601: EAELAPRHND WIVDSTYNLR AMELSGPR
Best Arabidopsis Sequence Match ( AT1G71830.1 )
(BLAST)
001: MESSYVVFIL LSLILLPNHS LWLASANLEG DALHTLRVTL VDPNNVLQSW DPTLVNPCTW FHVTCNNENS VIRVDLGNAE LSGHLVPELG VLKNLQYLEL
101: YSNNITGPIP SNLGNLTNLV SLDLYLNSFS GPIPESLGKL SKLRFLRLNN NSLTGSIPMS LTNITTLQVL DLSNNRLSGS VPDNGSFSLF TPISFANNLD
201: LCGPVTSHPC PGSPPFSPPP PFIQPPPVST PSGYGITGAI AGGVAAGAAL LFAAPAIAFA WWRRRKPLDI FFDVPAEEDP EVHLGQLKRF SLRELQVASD
301: GFSNKNILGR GGFGKVYKGR LADGTLVAVK RLKEERTPGG ELQFQTEVEM ISMAVHRNLL RLRGFCMTPT ERLLVYPYMA NGSVASCLRE RPPSQPPLDW
401: PTRKRIALGS ARGLSYLHDH CDPKIIHRDV KAANILLDEE FEAVVGDFGL AKLMDYKDTH VTTAVRGTIG HIAPEYLSTG KSSEKTDVFG YGIMLLELIT
501: GQRAFDLARL ANDDDVMLLD WVKGLLKEKK LEMLVDPDLQ TNYEERELEQ VIQVALLCTQ GSPMERPKMS EVVRMLEGDG LAEKWDEWQK VEILREEIDL
601: SPNPNSDWIL DSTYNLHAVE LSGPR
Arabidopsis Description
SERK1SERK1 [Source:UniProtKB/TrEMBL;Acc:A0A178W829]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.