Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 8
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 extracellular: 22364583
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g051510.1.1
Solyc04g072570.2.1
Solyc05g024010.2.1
Solyc06g074980.2.1
Solyc06g082920.2.1
Solyc07g006480.2.1
Solyc09g008070.2.1
Solyc10g084050.1.1
Solyc11g008430.1.1
Solyc11g069720.1.1
Solyc12g096710.1.1
Solyc12g096720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34210.1 Solyc06g082920.2.1 AT5G48380.1 19616764
AT1G34210.1 Solyc07g006480.2.1 AT5G48380.1 19616764
AT1G34210.1 Solyc12g096710.1.1 AT5G48380.1 19616764
AT1G34210.1 Solyc12g096720.1.1 AT5G48380.1 19616764
AT1G71830.1 Solyc04g072570.2.1 AT1G71830.1 11397085
AT1G71830.1 Solyc04g072570.2.1 AT1G71830.1 16621602
AT1G71830.1 Solyc05g024010.2.1 AT2G33500.1 16473966
AT1G71830.1 Solyc06g074980.2.1 AT3G09840.1 15592873
AT1G71830.1 Solyc09g008070.2.1 AT3G09840.1 15592873
AT1G71830.1 Solyc10g084050.1.1 AT3G09840.1 15592873
AT1G71830.1 Solyc11g069720.1.1 AT3G09840.1 15592873
AT1G71830.1 Solyc06g074980.2.1 AT3G09840.1 16473966
AT1G71830.1 Solyc09g008070.2.1 AT3G09840.1 16473966
AT1G71830.1 Solyc10g084050.1.1 AT3G09840.1 16473966
AT1G71830.1 Solyc11g069720.1.1 AT3G09840.1 16473966
AT1G71830.1 Solyc06g074980.2.1 AT3G09840.1 16621602
AT1G71830.1 Solyc09g008070.2.1 AT3G09840.1 16621602
AT1G71830.1 Solyc10g084050.1.1 AT3G09840.1 16621602
AT1G71830.1 Solyc11g069720.1.1 AT3G09840.1 16621602
AT1G71830.1 Solyc06g074980.2.1 AT3G09840.1 17693538
AT1G71830.1 Solyc09g008070.2.1 AT3G09840.1 17693538
AT1G71830.1 Solyc10g084050.1.1 AT3G09840.1 17693538
AT1G71830.1 Solyc11g069720.1.1 AT3G09840.1 17693538
AT1G71830.1 Solyc11g008430.1.1 AT3G54840.1 16621602
AT1G71830.1 Solyc04g051510.1.1 AT4G39400.1 16473966
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400070819 Potato plasma membrane 95.71 94.95
KRG91762 Soybean plasma membrane 92.69 93.43
KRH35013 Soybean plasma membrane 92.21 92.95
VIT_18s0164g00070.t01 Wine grape plasma membrane 91.89 92.63
KRH70218 Soybean endoplasmic reticulum 90.3 91.03
AT1G34210.1 Thale cress plasma membrane 88.71 88.85
AT1G71830.1 Thale cress plasma membrane 88.08 88.64
Bra003911.1-P Field mustard plasma membrane 80.45 88.62
CDY36679 Canola plasma membrane 87.44 88.57
CDX96350 Canola plasma membrane 87.44 88.0
CDX72833 Canola plasma membrane 87.44 88.0
GSMUA_Achr7P17210_001 Banana cytosol 68.84 87.83
Os08t0174700-01 Rice plasma membrane 85.53 86.22
TraesCS6D01G186900.2 Wheat plasma membrane 82.03 85.43
TraesCS6A01G203600.2 Wheat cytosol 82.51 85.22
TraesCS7A01G293300.3 Wheat plasma membrane 84.1 85.05
TraesCS7D01G291200.3 Wheat plasma membrane 83.94 85.02
GSMUA_Achr2P14850_001 Banana plastid 84.26 84.8
TraesCS7B01G182300.1 Wheat plasma membrane 83.62 84.57
KXG24562 Sorghum plasma membrane 84.74 84.47
GSMUA_Achr10P... Banana plasma membrane 83.94 84.34
GSMUA_AchrUn_... Banana plasma membrane 84.42 84.29
EES07030 Sorghum plasma membrane 83.78 84.19
Os04t0457800-01 Rice plasma membrane 83.94 84.08
Zm00001d016928_P010 Maize plasma membrane 83.47 83.87
Bra016112.1-P Field mustard plasma membrane 80.92 83.86
Zm00001d024430_P002 Maize plasma membrane 84.9 83.7
TraesCS2A01G343100.1 Wheat mitochondrion, plasma membrane 83.31 83.57
TraesCS2D01G321400.1 Wheat mitochondrion 83.15 83.41
TraesCS2B01G340700.1 Wheat plasma membrane 83.15 83.41
Zm00001d050868_P004 Maize plasma membrane 82.51 83.31
TraesCS6B01G223700.3 Wheat plasma membrane 82.99 83.12
HORVU6Hr1G049080.7 Barley plasma membrane 82.99 83.12
Zm00001d025580_P001 Maize plasma membrane 82.19 83.12
GSMUA_Achr7P11620_001 Banana plasma membrane 84.74 82.89
EES12285 Sorghum plasma membrane 81.88 82.8
Solyc01g104970.2.1 Tomato plasma membrane 80.13 81.82
Solyc10g047140.1.1 Tomato plasma membrane 79.49 81.3
HORVU7Hr1G068990.2 Barley mitochondrion 84.42 78.78
Zm00001d049480_P005 Maize plasma membrane 80.6 76.93
GSMUA_Achr10P... Banana mitochondrion 85.85 74.48
CDX68299 Canola plasma membrane 83.47 74.05
HORVU2Hr1G080020.6 Barley cytosol 82.83 73.59
Os06t0225300-01 Rice plasma membrane 57.71 58.93
Solyc11g008960.1.1 Tomato plasma membrane 53.1 55.3
Solyc03g078520.2.1 Tomato plasma membrane 52.62 54.53
Solyc04g039730.2.1 Tomato plasma membrane 53.58 54.09
Solyc02g089550.2.1 Tomato plasma membrane 52.94 53.19
Solyc04g005910.2.1 Tomato plasma membrane 51.67 52.42
Solyc05g010400.2.1 Tomato plasma membrane 51.67 52.33
Solyc05g005140.2.1 Tomato plasma membrane 50.08 52.24
Solyc02g072310.2.1 Tomato plasma membrane 37.52 50.11
Solyc05g056370.2.1 Tomato vacuole 48.81 49.84
Solyc07g006110.2.1 Tomato plasma membrane 49.13 48.97
Solyc07g062040.2.1 Tomato plastid 19.55 39.17
Solyc08g074760.2.1 Tomato plasma membrane 32.59 34.8
Solyc03g113450.2.1 Tomato plasma membrane 33.07 34.61
Protein Annotations
KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1KEGG:04714+2.7.11.1KEGG:04926+2.7.11.1KEGG:05165+2.7.11.1Gene3D:1.10.510.10
MapMan:11.3.2.1.2MapMan:18.4.1.2Gene3D:3.30.200.20Gene3D:3.80.10.10GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0004674GO:GO:0004675GO:GO:0004871GO:GO:0005102
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0006464GO:GO:0006468GO:GO:0007154GO:GO:0007165GO:GO:0007166GO:GO:0007178
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301
GO:GO:0016310GO:GO:0016740GO:GO:0019538GO:GO:0038023InterPro:IPR000719InterPro:IPR001611
InterPro:IPR032675UniProt:K4BTP4InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rpt
PFAM:PF00069PFAM:PF00560PFAM:PF08263ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011
PANTHER:PTHR27001PANTHER:PTHR27001:SF494InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSInterPro:SERKSMART:SM00220
SUPFAM:SSF52058SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASEnsemblPlantsGene:Solyc04g072570.2EnsemblPlants:Solyc04g072570.2.1TMHMM:TMhelix
UniParc:UPI0002766FBCSEG:seg::::
Description
No Description!
Coordinates
chr4:-:59543774..59550479
Molecular Weight (calculated)
69371.7 Da
IEP (calculated)
5.527
GRAVY (calculated)
-0.090
Length
629 amino acids
Sequence
(BLAST)
001: MVKVMEKDTV VVSLVVWLIL VVYHLKLIYA NMEGDALHSL RVNLQDPNNV LQSWDPTLVN PCTWFHVTCN NDNSVIRVDL GNAALSGLLV PQLGLLKNLQ
101: YLELYSNNIS GLIPSDLGNL TNLVSLDLYL NNFVGPIPDS LGKLSKLRFL RLNNNSLTGN IPMSLTNISS LQVLDLSNNR LSGAVPDNGS FSLFTPISFA
201: NNLDLCGPVT GRPCPGSPPF SPPPPFVPPP PISAPGGNGA TGAIAGGVAA GAALLFAAPA IAFAWWRRRK PQEYFFDVPA EEDPEVHLGQ LKRFSLRELQ
301: VATDSFSNKN ILGRGGFGKV YKGRLADGSL VAVKRLKEER TPGGELQFQT EVEMISMAVH RNLLRLRGFC MTPTERLLVY PYMANGSVAS CLRERPPSEP
401: PLDWPTRKRI ALGSARGLSY LHDHCDPKII HRDVKAANIL LDEEFEAVVG DFGLAKLMDY KDTHVTTAVR GTIGHIAPEY LSTGKSSEKT DVFGYGIMLL
501: ELITGQRAFD LARLANDDDV MLLDWVKGLL KEKKLEMLVD PDLQNKYVEA EVEQLIQVAL LCTQSNPMDR PKMSEVVRML EGDGLAERWD EWQKVEVLRQ
601: EVELAPHPGS DWLVDSTENL HAVELSGPR
Best Arabidopsis Sequence Match ( AT1G71830.1 )
(BLAST)
001: MESSYVVFIL LSLILLPNHS LWLASANLEG DALHTLRVTL VDPNNVLQSW DPTLVNPCTW FHVTCNNENS VIRVDLGNAE LSGHLVPELG VLKNLQYLEL
101: YSNNITGPIP SNLGNLTNLV SLDLYLNSFS GPIPESLGKL SKLRFLRLNN NSLTGSIPMS LTNITTLQVL DLSNNRLSGS VPDNGSFSLF TPISFANNLD
201: LCGPVTSHPC PGSPPFSPPP PFIQPPPVST PSGYGITGAI AGGVAAGAAL LFAAPAIAFA WWRRRKPLDI FFDVPAEEDP EVHLGQLKRF SLRELQVASD
301: GFSNKNILGR GGFGKVYKGR LADGTLVAVK RLKEERTPGG ELQFQTEVEM ISMAVHRNLL RLRGFCMTPT ERLLVYPYMA NGSVASCLRE RPPSQPPLDW
401: PTRKRIALGS ARGLSYLHDH CDPKIIHRDV KAANILLDEE FEAVVGDFGL AKLMDYKDTH VTTAVRGTIG HIAPEYLSTG KSSEKTDVFG YGIMLLELIT
501: GQRAFDLARL ANDDDVMLLD WVKGLLKEKK LEMLVDPDLQ TNYEERELEQ VIQVALLCTQ GSPMERPKMS EVVRMLEGDG LAEKWDEWQK VEILREEIDL
601: SPNPNSDWIL DSTYNLHAVE LSGPR
Arabidopsis Description
SERK1SERK1 [Source:UniProtKB/TrEMBL;Acc:A0A178W829]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.