Factsheet for Solyc09g008070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g072570.2.1
Solyc06g074980.2.1
Solyc09g008070.2.1
Solyc10g084050.1.1
Solyc11g069720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	Solyc04g072570.2.1	AT1G71830.1	15592873
AT3G09840.1	Solyc04g072570.2.1	AT1G71830.1	16473966
AT3G09840.1	Solyc04g072570.2.1	AT1G71830.1	16621602
AT3G09840.1	Solyc04g072570.2.1	AT1G71830.1	17693538
AT3G09840.1	Solyc06g074980.2.1	AT3G09840.1	15592873
AT3G09840.1	Solyc09g008070.2.1	AT3G09840.1	15592873
AT3G09840.1	Solyc10g084050.1.1	AT3G09840.1	15592873
AT3G09840.1	Solyc11g069720.1.1	AT3G09840.1	15592873
AT3G09840.1	Solyc06g074980.2.1	AT3G09840.1	16621602
AT3G09840.1	Solyc09g008070.2.1	AT3G09840.1	16621602
AT3G09840.1	Solyc10g084050.1.1	AT3G09840.1	16621602
AT3G09840.1	Solyc11g069720.1.1	AT3G09840.1	16621602
AT3G09840.1	Solyc06g074980.2.1	AT3G09840.1	17693538
AT3G09840.1	Solyc09g008070.2.1	AT3G09840.1	17693538
AT3G09840.1	Solyc10g084050.1.1	AT3G09840.1	17693538
AT3G09840.1	Solyc11g069720.1.1	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055513	Potato	cytosol	96.41	96.53
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	93.81	93.81
VIT_08s0040g01480.t01	Wine grape	cytosol	92.7	92.93
Solyc06g074980.2.1	Tomato	nucleus	91.09	91.43
Bra001297.1-P	Field mustard	cytosol	91.34	91.22
CDX73996	Canola	cytosol	91.34	91.22
CDY54618	Canola	cytosol	91.09	91.09
CDY22207	Canola	cytosol	91.21	90.99
CDY41316	Canola	cytosol, extracellular	91.21	90.99
CDY41581	Canola	cytosol	90.97	90.97
Bra034089.1-P	Field mustard	cytosol	91.09	90.86
Bra029795.1-P	Field mustard	cytosol	90.97	90.85
CDY07941	Canola	cytosol	90.97	90.85
AT5G03340.1	Thale cress	cytosol	90.97	90.74
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	90.35	90.68
AT3G09840.1	Thale cress	cytosol	90.59	90.48
CDY11249	Canola	cytosol	89.36	90.48
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	90.47	90.36
Zm00001d048409_P001	Maize	cytosol	89.23	89.68
Zm00001d027707_P001	Maize	cytosol, plasma membrane	89.48	89.59
GSMUA_Achr4P26800_001	Banana	cytosol	89.6	89.49
CDX80862	Canola	cytosol, plastid	89.48	89.37
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	89.36	89.25
Zm00001d014124_P001	Maize	cytosol, plasma membrane	88.74	88.41
Zm00001d032859_P006	Maize	plasma membrane	88.61	88.4
GSMUA_Achr9P23550_001	Banana	mitochondrion	86.26	86.48
TraesCSU01G001000.1	Wheat	cytosol	85.02	85.55
VIT_06s0061g00340.t01	Wine grape	cytosol	79.7	84.18
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	85.64	83.27
TraesCS3A01G144500.1	Wheat	cytosol	54.58	82.74
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	19.93	82.56
TraesCS3B01G154400.1	Wheat	cytosol	80.2	82.23
TraesCS3A01G145100.1	Wheat	cytosol	79.95	81.88
HORVU0Hr1G006340.1	Barley	cytosol	79.83	81.85
TraesCS3B01G171200.1	Wheat	cytosol	79.83	81.85
TraesCS3B01G171400.1	Wheat	cytosol	73.64	81.84
TraesCS1B01G419200.1	Wheat	cytosol	79.83	81.75
TraesCS1B01G259200.1	Wheat	cytosol	79.33	81.24
TraesCS3A01G145000.1	Wheat	cytosol	69.8	81.03
TraesCS3B01G172000.1	Wheat	cytosol	78.59	80.99
TraesCS3B01G172100.1	Wheat	cytosol	79.08	80.89
EER95525	Sorghum	cytosol	77.6	80.38
KXG40206	Sorghum	cytosol	77.72	80.31
HORVU3Hr1G029450.1	Barley	cytosol	79.83	79.83
HORVU3Hr1G029440.1	Barley	cytosol	79.83	79.24
TraesCS5B01G323100.1	Wheat	cytosol	56.56	78.66
TraesCS3B01G171300.1	Wheat	cytosol	70.79	78.46
TraesCS1A01G248500.1	Wheat	cytosol	57.55	77.89
Zm00001d032117_P001	Maize	cytosol	27.23	68.75
Bra005733.1-P	Field mustard	cytosol	90.35	66.12
Solyc05g012190.2.1	Tomato	cytosol	28.59	37.81
Solyc01g109940.2.1	Tomato	nucleus	16.96	34.42
Solyc10g054040.1.1	Tomato	cytosol, unclear	16.46	33.33
Solyc03g123730.2.1	Tomato	nucleus	17.08	32.24
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	17.08	32.17
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	7.3	31.05
Solyc01g068330.2.1	Tomato	nucleus	31.19	30.69
Solyc05g018590.2.1	Tomato	nucleus	15.35	29.74
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	15.35	29.74
Solyc06g082660.2.1	Tomato	cytosol, nucleus	15.1	29.47
Solyc06g082630.2.1	Tomato	cytosol, plastid	15.1	29.47
Solyc06g083620.2.1	Tomato	nucleus, plastid	16.09	29.28
Solyc01g099760.2.1	Tomato	nucleus, plastid	15.22	29.08
Solyc10g078320.1.1	Tomato	nucleus	33.54	27.46
Solyc06g008730.2.1	Tomato	cytosol	27.85	24.22
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	25.62	18.35

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	UniProt:K4CQJ6	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	EnsemblPlantsGene:Solyc09g008070.2	EnsemblPlants:Solyc09g008070.2.1	TIGRFAMs:TIGR01243
UniParc:UPI000276BCF0	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:1526327..1531029

Molecular Weight (calculated)

90054.3 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.418

Length

808 amino acids

Sequence
(BLAST)

001: MSNKAESSDS KGTKKDFSTA ILERKKSPNR LVIDEAINDD NSVVSLHPDT MQKLQFFRGD TILIKGKKRK DTICIAIVDD KCDESKIRMN KVVRNNLSVR
101: LGDVVSVHQC PDVKYGKRVH ILPIDDSIEG VTGNLFDAYL KPYFVEAYRP VRKGDLFLVR GGMRSVEFKV IETDPAEYCV VAPDTEIFCE GEPVNREDEN
201: RLDEVGYDDI GGVRKQMAQI RELVELPLRH PQMFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLR SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEVG RLEVLRIHTK NMKLAEDVDL
401: ERICKETHGY VGADLAALCT EAALQCIREK MDVIDLEDES IDAEILNSMA VTNEHFSTAL GTSNPSALRE TVVEVPNISW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RGSAPCVLFF DELDSIATQR GSSRGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEDSRYQI FKACLRKSPL SKDIDLRALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IERERRRRDN PEAMEEDVND EVSEIKPAHF EESMKYARRS VSDGDIRKYQ AFAQTLQQSR GFGSEFRFAG PTIGPTTGTT DPFATSAGGA
801: ADEDELYN

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.