Factsheet for AT3G09840.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54618	Canola	cytosol	98.39	98.51
Bra029795.1-P	Field mustard	cytosol	98.27	98.27
CDY41581	Canola	cytosol	98.15	98.27
Bra034089.1-P	Field mustard	cytosol	98.27	98.15
Bra001297.1-P	Field mustard	cytosol	98.15	98.15
CDX73996	Canola	cytosol	98.15	98.15
CDY41316	Canola	cytosol, extracellular	98.15	98.02
CDY22207	Canola	cytosol	98.15	98.02
CDY07941	Canola	cytosol	98.02	98.02
AT5G03340.1	Thale cress	cytosol	96.29	96.17
PGSC0003DMT400031321	Potato	cytosol	92.09	92.55
Solyc06g074980.2.1	Tomato	nucleus	92.09	92.55
PGSC0003DMT400027096	Potato	cytosol	92.34	92.45
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	92.21	92.33
VIT_08s0040g01480.t01	Wine grape	cytosol	91.97	92.31
PGSC0003DMT400055513	Potato	cytosol	91.84	92.07
PGSC0003DMT400050662	Potato	cytosol	91.35	91.8
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	91.35	91.8
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	91.22	91.22
AT3G53230.1	Thale cress	cytosol	91.84	91.17
Zm00001d048409_P001	Maize	cytosol	90.11	90.67
Solyc09g008070.2.1	Tomato	cytosol, unclear	90.48	90.59
Zm00001d027707_P001	Maize	cytosol, plasma membrane	90.36	90.58
Zm00001d032859_P006	Maize	plasma membrane	90.61	90.49
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	90.48	90.48
GSMUA_Achr4P26800_001	Banana	cytosol	90.48	90.48
Zm00001d014124_P001	Maize	cytosol, plasma membrane	90.48	90.26
GSMUA_Achr9P23550_001	Banana	mitochondrion	86.65	86.97
TraesCSU01G001000.1	Wheat	cytosol	86.03	86.67
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.64	85.64
TraesCS3B01G154400.1	Wheat	cytosol	82.45	84.64
VIT_06s0061g00340.t01	Wine grape	cytosol	79.73	84.31
TraesCS1B01G419200.1	Wheat	cytosol	81.83	83.9
HORVU0Hr1G006340.1	Barley	cytosol	81.71	83.88
TraesCS3B01G171200.1	Wheat	cytosol	81.46	83.63
TraesCS3A01G145100.1	Wheat	cytosol	81.33	83.4
TraesCS3B01G171400.1	Wheat	cytosol	74.91	83.36
TraesCS3B01G172100.1	Wheat	cytosol	81.33	83.29
TraesCS1B01G259200.1	Wheat	cytosol	81.09	83.14
TraesCS3A01G144500.1	Wheat	cytosol	54.76	83.11
TraesCS3B01G172000.1	Wheat	cytosol	80.35	82.91
TraesCS3A01G145000.1	Wheat	cytosol	71.2	82.76
KXG40206	Sorghum	cytosol	79.73	82.48
EER95525	Sorghum	cytosol	79.36	82.31
HORVU3Hr1G029450.1	Barley	cytosol	81.71	81.81
HORVU3Hr1G029440.1	Barley	cytosol	81.71	81.2
TraesCS3B01G171300.1	Wheat	cytosol	72.44	80.38
TraesCS5B01G323100.1	Wheat	cytosol	57.6	80.21
TraesCS1A01G248500.1	Wheat	cytosol	59.09	80.07
Zm00001d032117_P001	Maize	cytosol	27.07	68.44
AT2G03670.1	Thale cress	cytosol	27.07	36.32
AT1G45000.1	Thale cress	cytosol	17.06	34.59
AT5G43010.1	Thale cress	cytosol	16.81	34.09
AT1G53750.1	Thale cress	cytosol	17.43	33.1
AT3G01610.2	Thale cress	nucleus	31.89	31.08
AT5G58290.1	Thale cress	cytosol	15.2	30.15
AT2G20140.1	Thale cress	cytosol	16.07	29.35
AT3G05530.1	Thale cress	cytosol	15.33	29.25
AT5G20000.1	Thale cress	cytosol	15.08	29.12
AT1G09100.1	Thale cress	cytosol	15.2	29.08
AT4G29040.1	Thale cress	cytosol	15.82	28.89
AT5G19990.1	Thale cress	cytosol	14.96	28.88
AT3G56690.1	Thale cress	cytosol, plastid	32.51	25.73
AT1G03000.1	Thale cress	mitochondrion	28.06	24.12
AT1G53780.2	Thale cress	cytosol	16.93	22.1
AT5G08470.1	Thale cress	cytosol	25.34	18.14

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	EntrezGene:820142
UniProt:A0A178V7Z3	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	ProteinID:AAF23260.1	ProteinID:AEE74820.1	EMBL:AK317766
ArrayExpress:AT3G09840	EnsemblPlantsGene:AT3G09840	RefSeq:AT3G09840	TAIR:AT3G09840	RefSeq:AT3G09840-TAIR-G	EnsemblPlants:AT3G09840.1
TAIR:AT3G09840.1	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EMBL:AY065076	EMBL:AY094434	InterPro:Asp_de-COase-like_dom_sf
Unigene:At.21739	UniProt:B9DI55	Symbol:CDC48	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005730	GO:GO:0005737	GO:GO:0005794	GO:GO:0005819
GO:GO:0005829	GO:GO:0005840	GO:GO:0005856	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950
GO:GO:0007049	GO:GO:0008150	GO:GO:0009506	GO:GO:0009524	GO:GO:0009653	GO:GO:0009846
GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0016049	GO:GO:0016787	GO:GO:0022626	GO:GO:0030154	GO:GO:0030312	GO:GO:0031348
GO:GO:0031648	GO:GO:0040007	GO:GO:0042802	GO:GO:0046686	GO:GO:0048046	GO:GO:0051301
RefSeq:NP_187595.1	ProteinID:OAP01791.1	InterPro:P-loop_NTPase	UniProt:P54609	PFAM:PF00004	PFAM:PF02359
PFAM:PF02933	PO:PO:0000005	PO:PO:0000013	PO:PO:0000017	PO:PO:0000035	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001170	PO:PO:0001185	PO:PO:0004507	PO:PO:0006085
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009015	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020041	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025181
PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF127	SMART:SM00382
SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243
EMBL:U37587	UniParc:UPI0000126C1E	SEG:seg	:	:	:

Description

CDC48AAT3G09840 protein [Source:UniProtKB/TrEMBL;Acc:B9DI55]

Coordinates

chr3:+:3019249..3023052

Molecular Weight (calculated)

89398.3 Da

IEP (calculated)

4.877

GRAVY (calculated)

-0.381

Length

809 amino acids

Sequence
(BLAST)

001: MSTPAESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWN DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKAALRKSPI AKDVDIGALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFEN SAGSGATTGV ADPFATSAAA
801: AGDDDDLYN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.