Factsheet for VIT_06s0061g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
endoplasmic reticulum 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g00340.t01
VIT_08s0040g01480.t01
VIT_18s0164g00070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	VIT_18s0164g00070.t01	AT1G71830.1	15592873
AT3G09840.1	VIT_18s0164g00070.t01	AT1G71830.1	16473966
AT3G09840.1	VIT_18s0164g00070.t01	AT1G71830.1	16621602
AT3G09840.1	VIT_18s0164g00070.t01	AT1G71830.1	17693538
AT3G09840.1	VIT_06s0061g00340.t01	AT3G09840.1	15592873
AT3G09840.1	VIT_08s0040g01480.t01	AT3G09840.1	15592873
AT3G09840.1	VIT_06s0061g00340.t01	AT3G09840.1	16621602
AT3G09840.1	VIT_08s0040g01480.t01	AT3G09840.1	16621602
AT3G09840.1	VIT_06s0061g00340.t01	AT3G09840.1	17693538
AT3G09840.1	VIT_08s0040g01480.t01	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01480.t01	Wine grape	cytosol	88.1	83.62
PGSC0003DMT400027096	Potato	cytosol	86.14	81.56
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	86.01	81.44
GSMUA_Achr4P26800_001	Banana	cytosol	86.01	81.33
Solyc06g074980.2.1	Tomato	nucleus	85.49	81.24
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	85.75	81.09
PGSC0003DMT400031321	Potato	cytosol	85.23	80.99
PGSC0003DMT400055513	Potato	cytosol	85.23	80.79
PGSC0003DMT400050662	Potato	cytosol	84.97	80.75
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	84.84	80.62
CDY13308	Canola	cytosol	85.36	80.62
CDY11249	Canola	cytosol	83.79	80.33
Zm00001d048409_P001	Maize	cytosol	84.31	80.22
Bra003123.1-P	Field mustard	cytosol	84.84	80.12
AT5G03340.1	Thale cress	cytosol	84.84	80.12
CDY41316	Canola	cytosol, extracellular	84.71	80.0
CDY22207	Canola	cytosol	84.58	79.88
Bra034089.1-P	Field mustard	cytosol	84.58	79.88
CDY07941	Canola	cytosol	84.44	79.85
Bra001297.1-P	Field mustard	cytosol	84.44	79.85
CDX73996	Canola	cytosol	84.44	79.85
CDY54618	Canola	cytosol	84.31	79.83
AT3G53230.1	Thale cress	cytosol	84.97	79.75
AT3G09840.1	Thale cress	cytosol	84.31	79.73
Solyc09g008070.2.1	Tomato	cytosol, unclear	84.18	79.7
Bra029795.1-P	Field mustard	cytosol	84.18	79.6
CDY41581	Canola	cytosol	84.05	79.58
Zm00001d027707_P001	Maize	cytosol, plasma membrane	83.79	79.43
Zm00001d032859_P006	Maize	plasma membrane	83.92	79.26
TraesCS3A01G144500.1	Wheat	cytosol	55.16	79.17
VIT_17s0000g08890.t01	Wine grape	cytosol	84.18	79.12
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	83.66	79.11
Zm00001d014124_P001	Maize	cytosol, plasma membrane	83.66	78.91
CDX80862	Canola	cytosol, plastid	83.4	78.86
Bra006978.1-P	Field mustard	cytosol	83.4	78.67
GSMUA_Achr9P23550_001	Banana	mitochondrion	81.7	77.54
TraesCS3B01G171400.1	Wheat	cytosol	73.59	77.44
EER95525	Sorghum	cytosol	78.95	77.44
TraesCS3B01G154400.1	Wheat	cytosol	79.74	77.41
TraesCS1B01G419200.1	Wheat	cytosol	79.74	77.31
TraesCS3B01G171200.1	Wheat	cytosol	79.61	77.28
HORVU0Hr1G006340.1	Barley	cytosol	79.48	77.16
KXG40206	Sorghum	cytosol	78.82	77.11
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	19.61	76.92
TraesCSU01G001000.1	Wheat	cytosol	80.65	76.84
TraesCS3A01G145100.1	Wheat	cytosol	79.08	76.68
TraesCS3B01G172000.1	Wheat	cytosol	78.43	76.53
TraesCS3B01G172100.1	Wheat	cytosol	78.95	76.46
TraesCS1B01G259200.1	Wheat	cytosol	78.69	76.3
TraesCS3A01G145000.1	Wheat	cytosol	68.89	75.72
HORVU3Hr1G029450.1	Barley	cytosol	79.48	75.25
HORVU3Hr1G029440.1	Barley	cytosol	79.48	74.69
TraesCS1A01G248500.1	Wheat	cytosol	57.39	73.53
TraesCS3B01G171300.1	Wheat	cytosol	69.8	73.25
TraesCS5B01G323100.1	Wheat	cytosol	55.42	72.98
CDX67563	Canola	cytosol	83.14	72.35
Zm00001d032117_P001	Maize	cytosol	27.45	65.62
Bra005733.1-P	Field mustard	cytosol	84.84	58.79
VIT_18s0001g13090.t01	Wine grape	cytosol	17.78	34.17
VIT_03s0038g04350.t01	Wine grape	cytosol	17.78	34.09
VIT_09s0002g00170.t01	Wine grape	cytosol	18.3	32.86
VIT_11s0016g00230.t01	Wine grape	cytosol	17.52	31.53
VIT_01s0010g02600.t01	Wine grape	cytosol	33.2	30.79
VIT_06s0004g08220.t01	Wine grape	cytosol	16.21	29.67
VIT_05s0020g01180.t01	Wine grape	cytosol	15.95	28.84
VIT_14s0060g02260.t01	Wine grape	cytosol	15.16	28.64
VIT_04s0008g04690.t01	Wine grape	cytosol	15.42	28.1
VIT_07s0005g05160.t01	Wine grape	cytosol	16.21	27.87
VIT_09s0002g05800.t01	Wine grape	cytosol	15.16	27.82
VIT_08s0040g00910.t01	Wine grape	cytosol	33.99	24.55
VIT_07s0104g01610.t01	Wine grape	cytosol	26.8	21.86
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	26.54	17.9

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100246467	wikigene:100246467	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
ProteinID:CCB44238	ProteinID:CCB44238.1	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	UniProt:F6GWA3
EMBL:FN594957	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EntrezGene:LOC100246467	wikigene:LOC100246467	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359
PFAM:PF02933	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF123	SMART:SM00382
SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243
UniParc:UPI000210A61C	ArrayExpress:VIT_06s0061g00340	EnsemblPlantsGene:VIT_06s0061g00340	EnsemblPlants:VIT_06s0061g00340.t01	InterPro:Vps4_C	RefSeq:XP_002276976
RefSeq:XP_002276976.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:17725609..17729682

Molecular Weight (calculated)

85217.9 Da

IEP (calculated)

5.261

GRAVY (calculated)

-0.379

Length

765 amino acids

Sequence
(BLAST)

001: MHSITIETLK IFRGDTILIK GKKRKDTVCI AITDDTCEPA KIRMNKIVRS NLRVKLGDVV SVHDCMDIMY GERVHILPMD DTIEGVTGNL YDAYLKPYFS
101: DNFRPVRKGD LFLVRGGMRS VEFKVVETHP GEYCVVDPDT EIFFEGKPVR REDEERLDEV GYDDVGGFRK QMAQIRELVE LPLRHPQLFK SIGVKPPKGI
201: LLYGPPGSGK TLIAKAVANE TGAFFFCING PEIMSKLAGE SEGNLRKAFE EAEKNAPSIV FIDEIDSIAP KREKTHGQVE KRIVSQLLTL MDGLKSRAHV
301: IVIGATNRPN SIDPALRRFG RFDREIDIGV PDEVGRLEVL RIHTKNMKLS DDAIQKEKGI IVDLERIAKD SHGYVGADLA ALCTEAALQS IREKMDVIDL
401: EDEAIDAEVL NSMAVTDKHF KTALGTTNPS ALRETVVEVP NVSWEDIGGL EYVKRELQET VQYPVEHPEK FEQFGMSPSR GVLFYGPPGC GKTLLAKAIA
501: NECQANFISV KGPELLTKWF GESEANVREI FDKARQSASC VLFFDELDSI ATQRGSNLGD AGGADRVLNQ LLIEMDGMSA KKTVFIIGAT NRPDIIDPAL
601: LRPGRLDQLI YIPLPDEDSR HQIFKACLRK SPVSKHVDLR ALAKYTQGFS GADITEICQR ACKYAIRENI EKDIEKKRGR EENPKAMDED LEEEVAEITA
701: SHFEESMKYA RRSVSEADIR KYQAFAQQSR GFGSQFRFSE AGPGGSGSNP LGTSTSGPEE DDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.