Factsheet for HORVU3Hr1G029440.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G006340.1
HORVU2Hr1G080020.6
HORVU3Hr1G029440.1
HORVU3Hr1G029450.1
HORVU6Hr1G049080.7
HORVU7Hr1G068990.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	HORVU2Hr1G080020.6	AT1G71830.1	15592873
AT3G09840.1	HORVU6Hr1G049080.7	AT1G71830.1	15592873
AT3G09840.1	HORVU7Hr1G068990.2	AT1G71830.1	15592873
AT3G09840.1	HORVU2Hr1G080020.6	AT1G71830.1	16473966
AT3G09840.1	HORVU6Hr1G049080.7	AT1G71830.1	16473966
AT3G09840.1	HORVU7Hr1G068990.2	AT1G71830.1	16473966
AT3G09840.1	HORVU2Hr1G080020.6	AT1G71830.1	16621602
AT3G09840.1	HORVU6Hr1G049080.7	AT1G71830.1	16621602
AT3G09840.1	HORVU7Hr1G068990.2	AT1G71830.1	16621602
AT3G09840.1	HORVU2Hr1G080020.6	AT1G71830.1	17693538
AT3G09840.1	HORVU6Hr1G049080.7	AT1G71830.1	17693538
AT3G09840.1	HORVU7Hr1G068990.2	AT1G71830.1	17693538
AT3G09840.1	HORVU0Hr1G006340.1	AT3G09840.1	15592873
AT3G09840.1	HORVU3Hr1G029440.1	AT3G09840.1	15592873
AT3G09840.1	HORVU3Hr1G029450.1	AT3G09840.1	15592873
AT3G09840.1	HORVU0Hr1G006340.1	AT3G09840.1	16621602
AT3G09840.1	HORVU3Hr1G029440.1	AT3G09840.1	16621602
AT3G09840.1	HORVU3Hr1G029450.1	AT3G09840.1	16621602
AT3G09840.1	HORVU0Hr1G006340.1	AT3G09840.1	17693538
AT3G09840.1	HORVU3Hr1G029440.1	AT3G09840.1	17693538
AT3G09840.1	HORVU3Hr1G029450.1	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G029660.1	Barley	cytosol, peroxisome	4.18	100.0
HORVU0Hr1G006340.1	Barley	cytosol	96.81	100.0
HORVU3Hr1G029450.1	Barley	cytosol	99.14	99.88
TraesCS3B01G154400.1	Wheat	cytosol	93.0	96.07
TraesCS3B01G171200.1	Wheat	cytosol	91.77	94.8
TraesCS3D01G153800.1	Wheat	cytosol	78.87	94.41
TraesCS1B01G259200.1	Wheat	cytosol	91.4	94.3
TraesCS3A01G144500.1	Wheat	cytosol	61.67	94.18
TraesCS3B01G172100.1	Wheat	cytosol	91.4	94.18
TraesCS1B01G419200.1	Wheat	cytosol	91.28	94.17
TraesCS1D01G399100.1	Wheat	cytosol	91.28	94.17
TraesCS3D01G154000.1	Wheat	cytosol	91.03	94.04
TraesCS3B01G172000.1	Wheat	cytosol	90.42	93.88
TraesCS1D01G248000.1	Wheat	cytosol	90.91	93.79
TraesCS3A01G145100.1	Wheat	cytosol	90.54	93.41
TraesCS3A01G145000.1	Wheat	cytosol	79.61	93.1
TraesCS3B01G171400.1	Wheat	cytosol	82.92	92.85
TraesCS3D01G153900.1	Wheat	cytosol	89.68	92.64
TraesCS3B01G171300.1	Wheat	cytosol	82.31	91.91
TraesCS6D01G360700.1	Wheat	cytosol	81.7	90.35
TraesCS1A01G248500.1	Wheat	cytosol	65.6	89.45
TraesCS5B01G323100.1	Wheat	cytosol	63.76	89.33
HORVU0Hr1G038060.2	Barley	cytosol	55.28	85.07
KRG99061	Soybean	cytosol	20.76	84.5
KRG94277	Soybean	cytosol	21.38	84.06
EER95525	Sorghum	cytosol	80.47	83.97
KXG40206	Sorghum	cytosol	80.47	83.76
VIT_08s0040g01480.t01	Wine grape	cytosol	81.82	82.63
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	81.45	82.05
KRH67721	Soybean	endoplasmic reticulum, nucleus	81.45	82.05
CDY11249	Canola	cytosol	80.34	81.95
CDX73996	Canola	cytosol	81.45	81.95
Bra001297.1-P	Field mustard	cytosol	81.45	81.95
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	81.45	81.75
PGSC0003DMT400050662	Potato	cytosol	80.84	81.74
HORVU4Hr1G072010.4	Barley	cytosol	81.82	81.72
CDY07941	Canola	cytosol	81.2	81.71
AT3G09840.1	Thale cress	cytosol	81.2	81.71
CDY41316	Canola	cytosol, extracellular	81.2	81.6
CDY22207	Canola	cytosol	81.2	81.6
PGSC0003DMT400027096	Potato	cytosol	80.96	81.56
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	80.96	81.56
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	80.59	81.49
AT5G03340.1	Thale cress	cytosol	81.08	81.48
Bra034089.1-P	Field mustard	cytosol	81.08	81.48
CDY13308	Canola	cytosol	81.08	81.48
AT3G53230.1	Thale cress	cytosol	81.57	81.47
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	81.33	81.43
Solyc06g074980.2.1	Tomato	nucleus	80.47	81.37
PGSC0003DMT400031321	Potato	cytosol	80.47	81.37
Bra003123.1-P	Field mustard	cytosol	80.96	81.36
CDY54618	Canola	cytosol	80.71	81.31
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	80.59	81.29
HORVU4Hr1G071960.2	Barley	cytosol	81.57	81.27
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	80.47	81.16
Bra029795.1-P	Field mustard	cytosol	80.59	81.09
CDY41581	Canola	cytosol	80.47	81.06
PGSC0003DMT400055513	Potato	cytosol	80.1	80.79
KRH30601	Soybean	cytosol	79.73	80.52
CDX80862	Canola	cytosol, plastid	79.98	80.47
HORVU1Hr1G049910.1	Barley	cytosol	80.34	80.34
Bra006978.1-P	Field mustard	cytosol	79.85	80.15
HORVU1Hr1G060370.1	Barley	cytosol	79.24	79.93
Solyc09g008070.2.1	Tomato	cytosol, unclear	79.24	79.83
HORVU1Hr1G060340.2	Barley	cytosol	79.48	79.58
VIT_06s0061g00340.t01	Wine grape	cytosol	74.69	79.48
CDX78154	Canola	cytosol	72.36	79.17
CDX73571	Canola	cytosol	71.74	78.6
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	69.53	78.18
CDX67563	Canola	cytosol	78.99	73.15
GSMUA_Achr3P00250_001	Banana	cytosol	17.57	72.96
HORVU5Hr1G069560.1	Barley	cytosol	18.43	70.75
HORVU6Hr1G053620.1	Barley	cytosol	30.34	68.8
HORVU2Hr1G011690.1	Barley	cytosol	64.0	63.23
KRH45638	Soybean	cytosol	24.82	62.93
Bra005733.1-P	Field mustard	cytosol	81.08	59.78
HORVU2Hr1G086170.2	Barley	cytosol	28.75	41.12
HORVU3Hr1G067470.2	Barley	cytosol	10.69	38.33
HORVU6Hr1G049800.1	Barley	cytosol	2.33	33.93
HORVU6Hr1G083150.1	Barley	cytosol	17.08	32.63
HORVU7Hr1G119300.13	Barley	cytosol	15.97	32.34
HORVU6Hr1G032570.5	Barley	cytosol	16.22	32.27
HORVU2Hr1G107280.1	Barley	cytosol	14.62	32.16
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	14.99	31.77
HORVU7Hr1G032070.1	Barley	cytosol	17.2	31.53
HORVU2Hr1G014000.1	Barley	cytosol	15.72	31.22
HORVU7Hr1G090380.3	Barley	cytosol	16.58	30.96
HORVU7Hr1G002880.2	Barley	plastid	30.47	30.96
HORVU0Hr1G013350.2	Barley	cytosol	10.69	28.25
HORVU7Hr1G084550.2	Barley	cytosol	14.5	27.9
HORVU4Hr1G055060.1	Barley	cytosol	14.99	27.11
HORVU2Hr1G014770.2	Barley	cytosol, plastid	14.25	26.3
HORVU4Hr1G016200.10	Barley	cytosol, plastid	32.31	26.14
HORVU1Hr1G015310.16	Barley	cytosol, plastid	31.82	25.77
HORVU6Hr1G036990.7	Barley	cytosol	14.5	25.54
HORVU2Hr1G104530.9	Barley	cytosol	26.41	23.55
HORVU3Hr1G095530.3	Barley	mitochondrion, plastid	6.27	20.32
HORVU1Hr1G091080.1	Barley	mitochondrion, plastid	6.02	19.52
HORVU7Hr1G058410.7	Barley	cytosol, peroxisome	22.85	16.8
HORVU5Hr1G078590.8	Barley	plastid	22.97	16.55

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	UniProt:A0A287KKS3
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:HORVU3Hr1G029440	EnsemblPlants:HORVU3Hr1G029440.1	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382
SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243
UniParc:UPI000B475D89	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:135914645..135917089

Molecular Weight (calculated)

90309.8 Da

IEP (calculated)

5.156

GRAVY (calculated)

-0.362

Length

814 amino acids

Sequence
(BLAST)

001: TSARHPSNES NNPLETQRVH HRELNTMAIT ASSKKAANRL VVEDASTNDD NSVCTLHPDT MEKLSLFKGD TVLLKGKRRH STVCMALPDD TCEEHKMRIN
101: KVARSNLRVR IADVVSVHLC HDVKYARRVH ILPLDDTVEG IAGNLFDAYL KPYFVDAFRP VHKGDLFLVR GGMRSVEFKV MEIDPAADYC IVMPDTEIFC
201: EGEPVKREDE ERLDDVGYDD VGGMGKPLTQ IRELVELPLR HPQIFKSIGV KPPKGILLYG PPGSGKTLIA RAVANETGAF FFLINGPEIM SKMAGESESN
301: LRKAFEEAEK NAPSIIFIDE IDSIAPNREK THGEVERRIV SQLLTLMDGM KARAHVIVMG ATNRPNSIDP ALRRFGRFDR EIDIGVPDEV GRLEVLRIHT
401: KNMKLDEEVN LEVIAKDTHG YVGADLAALC TEAALQCIRE KMDVIDLEDD TIDAEILNSM AVTNDHLKTA LVGTNPSALR ETVVEVPNVS WNDVGGLDGV
501: KRELQETVQY PVEHPEKFEK FGMSPSKGVL FYGPPGCGKT LLAKAIANEC QANFISIKGP ELLTMWFGES EANVREIFDK ARQSAPCVLF FDELDSIATQ
601: RGGRMGDAGG AADRVLNQLL TEMDGMNAKK TVFIIGATNR PDIIDSALLR PGRLDQLIYI PLPDEASRHQ IFKACLRKSP VAKDVDLGAL ARFTAGFSGA
701: DITEICQRAC KYAIREDIEK DMERQRMGQD TMEPDGGQEE EAAEIKAAHF EESMKYARRS VSDADVRKYR AFAQTLQQSR GFGTEFRFPA QPHAAEAAVH
801: TSAAADEDED DLYK

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.