CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 25806999
endoplasmic reticulum: 27224218

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99061	Soybean	cytosol	24.86	90.0
KRG94277	Soybean	cytosol	25.14	87.92
KRH30601	Soybean	cytosol	91.44	82.13
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	88.95	79.8
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	88.81	79.68
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	87.85	78.71
KRH67721	Soybean	endoplasmic reticulum, nucleus	87.85	78.71
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	88.12	78.67
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	88.26	78.6
Zm00001d048409_P001	Maize	cytosol	86.33	77.74
Zm00001d027707_P001	Maize	cytosol, plasma membrane	86.6	77.7
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	85.77	76.76
Zm00001d032859_P006	Maize	plasma membrane	85.5	76.42
Zm00001d014124_P001	Maize	cytosol, plasma membrane	85.08	75.96
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	84.39	75.06
TraesCS3B01G171400.1	Wheat	cytosol	75.14	74.83
KRH63585	Soybean	endoplasmic reticulum	84.12	74.82
TraesCSU01G001000.1	Wheat	cytosol	80.66	72.73
TraesCS3B01G154400.1	Wheat	cytosol	78.18	71.83
HORVU0Hr1G006340.1	Barley	cytosol	78.18	71.83
TraesCS1B01G419200.1	Wheat	cytosol	78.18	71.74
TraesCS3A01G145100.1	Wheat	cytosol	78.04	71.61
TraesCS3B01G171200.1	Wheat	cytosol	77.62	71.32
TraesCS1B01G259200.1	Wheat	cytosol	77.21	70.85
TraesCS3B01G172000.1	Wheat	cytosol	76.66	70.79
TraesCS5B01G323100.1	Wheat	cytosol	56.63	70.57
TraesCS3B01G172100.1	Wheat	cytosol	76.93	70.51
EER95525	Sorghum	cytosol	75.55	70.13
HORVU3Hr1G029450.1	Barley	cytosol	78.18	70.05
TraesCS1A01G248500.1	Wheat	cytosol	57.73	70.02
KXG40206	Sorghum	cytosol	75.41	69.82
TraesCS3A01G144500.1	Wheat	cytosol	51.38	69.79
HORVU3Hr1G029440.1	Barley	cytosol	78.18	69.53
TraesCS3A01G145000.1	Wheat	cytosol	66.3	68.97
TraesCS3B01G171300.1	Wheat	cytosol	68.51	68.04
KRH45638	Soybean	cytosol	29.56	66.67
Zm00001d032117_P001	Maize	cytosol	28.45	64.38
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	16.44	61.03
KRH70928	Soybean	cytosol	26.8	32.01
KRH51796	Soybean	cytosol	16.71	30.4
KRH61120	Soybean	endoplasmic reticulum	16.71	30.4
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	16.71	30.33
KRH05868	Soybean	cytosol, nucleus	16.71	30.33
KRG97280	Soybean	cytosol, nucleus	17.82	30.28
KRH06311	Soybean	cytosol	17.82	30.28
KRH69005	Soybean	nucleus	17.82	30.28
KRH47728	Soybean	cytosol, nucleus	17.82	30.28
KRH44049	Soybean	nucleus	32.32	29.58
KRG92899	Soybean	cytosol, nucleus	16.44	28.13
KRH33891	Soybean	endoplasmic reticulum, nucleus	16.44	28.13
KRH30674	Soybean	cytosol, nucleus	15.75	27.6
KRH19693	Soybean	cytosol	16.71	27.31
KRH32292	Soybean	cytosol, nucleus	16.71	27.31
KRG98107	Soybean	cytosol	15.88	27.25
KRH30673	Soybean	cytosol, nucleus	15.88	27.19
KRH67524	Soybean	nucleus	16.71	27.13
KRG95799	Soybean	cytosol, nucleus	16.71	27.13
KRH68501	Soybean	nucleus	15.75	26.82
KRH44668	Soybean	cytosol, mitochondrion, nucleus	15.47	26.79
KRH46990	Soybean	nucleus	15.47	26.79
KRH06953	Soybean	cytosol	9.81	26.3
KRH10420	Soybean	mitochondrion	17.4	25.45
KRH51488	Soybean	mitochondrion	14.64	25.06
KRH45565	Soybean	endoplasmic reticulum	7.04	25.0
KRG96790	Soybean	mitochondrion	11.46	25.0
KRH66707	Soybean	plastid	34.39	23.8
KRG95054	Soybean	plastid	23.62	22.18
KRG96401	Soybean	mitochondrion	27.49	21.65
KRH00031	Soybean	plastid	9.67	20.29
KRH68139	Soybean	cytosol	18.65	20.15
KRH50491	Soybean	cytosol	26.38	16.9

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02007200	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	ncoils:Coil
EnsemblPlantsGene:GLYMA_12G079200	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	UniProt:K7LTM9
EnsemblPlants:KRH25081	ProteinID:KRH25081	ProteinID:KRH25081.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359
PANTHER:PTHR23077	PANTHER:PTHR23077:SF123	SMART:SM00382	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540
SUPFAM:SSF54585	UniParc:UPI000295B7F8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:6189583..6193598

Molecular Weight (calculated)

81537.0 Da

IEP (calculated)

6.009

GRAVY (calculated)

-0.375

Length

724 amino acids

Sequence
(BLAST)

001: MSHQVESSDS KSWKKDSSTS ILERKKSPNR LVVDEAVNDD NSVVAMHPQT LKKLQLFRGD TILVKGKKRK DTVCIALRDE NCEESKIRLN KVLRSNLRVR
101: LGDAVSVHSC PDVKYGKRVH ILPIDDTIEG VTGNLFDAYL KLIFHMLSQT HARHMHDIFL VQGGMRSVEF KVIEIDPGEY CVVARDTEIF CEREPVKRED
201: EERLDEVGYD DVGCVRKQMA QIRELVELPL RHPQLFKSIG VKPPKGILLY GPPGSGKTLK ARAVSNETGA FFFCINGPEI MSKLAGESKI DSIAPKREKT
301: HGEVERRIVL QLLTLMDGFK SRAHVIVIGA TNRPNSSPAL RRFGRFDREI DIGVPDEVGR LEVLRIHTKN MKFSDDVDIE RIAKDTHGYV GADLAAICTE
401: AALQCIREKM DVIDLEDENI DAEVLNSMTV SNEHFHTALG TSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV EHPEKFGKFG MSPSKGVLFY
501: GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQML GVAADRVLNQ LLTEMDGMNV KKTVFIIGAT
601: NRPDIIDSAL LWPGRLDQLI YIPLPDQESR YQIFKACMRK SPVSKDVDLR ALAEYTKGFS GADITEICQR ACKYAIRENI EKDIERERKK RDNLEAMDED
701: IEEEDVAEIK AAHFEESMKY ARRS

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.