Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G171400.1 | Wheat | cytosol | 89.09 | 96.56 |
| TraesCS3B01G172100.1 | Wheat | cytosol | 96.32 | 96.08 |
| TraesCS3A01G145100.1 | Wheat | cytosol | 95.81 | 95.69 |
| TraesCS3B01G154400.1 | Wheat | cytosol | 95.56 | 95.56 |
| TraesCS1D01G399100.1 | Wheat | cytosol | 95.56 | 95.44 |
| TraesCS1B01G259200.1 | Wheat | cytosol | 95.43 | 95.31 |
| TraesCS1B01G419200.1 | Wheat | cytosol | 95.43 | 95.31 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 94.8 | 94.8 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 94.04 | 94.52 |
| TraesCS3B01G171300.1 | Wheat | cytosol | 86.29 | 93.28 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 94.8 | 92.45 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 94.8 | 91.77 |
| TraesCS5B01G323100.1 | Wheat | cytosol | 65.61 | 88.98 |
| EER95525 | Sorghum | cytosol | 84.52 | 85.38 |
| KXG40206 | Sorghum | cytosol | 84.26 | 84.91 |
| TraesCS1B01G235400.1 | Wheat | cytosol | 69.16 | 84.89 |
| KRG94277 | Soybean | cytosol | 22.08 | 84.06 |
| KRG99061 | Soybean | cytosol | 21.32 | 84.0 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 84.14 | 82.26 |
| KRH67721 | Soybean | endoplasmic reticulum, nucleus | 84.01 | 81.93 |
| KRG96011 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 84.01 | 81.93 |
| CDX73996 | Canola | cytosol | 83.88 | 81.71 |
| Bra001297.1-P | Field mustard | cytosol | 83.88 | 81.71 |
| CDY11249 | Canola | cytosol | 82.74 | 81.7 |
| KRH19916 | Soybean | endoplasmic reticulum, mitochondrion | 83.88 | 81.5 |
| AT3G09840.1 | Thale cress | cytosol | 83.63 | 81.46 |
| CDY07941 | Canola | cytosol | 83.63 | 81.46 |
| KRH26511 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 83.38 | 81.41 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 83.38 | 81.31 |
| PGSC0003DMT400027096 | Potato | cytosol | 83.38 | 81.31 |
| TraesCS4B01G268400.1 | Wheat | golgi | 83.88 | 81.3 |
| TraesCS4B01G268200.1 | Wheat | cytosol | 84.26 | 81.27 |
| TraesCS1B01G235300.1 | Wheat | cytosol | 82.49 | 81.25 |
| PGSC0003DMT400050662 | Potato | cytosol | 82.99 | 81.24 |
| CDY22207 | Canola | cytosol | 83.5 | 81.23 |
| CDY41316 | Canola | cytosol, extracellular | 83.5 | 81.23 |
| AT5G03340.1 | Thale cress | cytosol | 83.5 | 81.23 |
| KRH32530 | Soybean | endoplasmic reticulum, mitochondrion | 83.76 | 81.18 |
| KRH22853 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 83.12 | 81.16 |
| CDY13308 | Canola | cytosol | 83.38 | 81.11 |
| Bra034089.1-P | Field mustard | cytosol | 83.38 | 81.11 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 82.74 | 80.99 |
| Bra003123.1-P | Field mustard | cytosol | 83.25 | 80.99 |
| CDY54618 | Canola | cytosol | 82.99 | 80.94 |
| PGSC0003DMT400055513 | Potato | cytosol | 82.87 | 80.92 |
| PGSC0003DMT400031321 | Potato | cytosol | 82.61 | 80.87 |
| Solyc06g074980.2.1 | Tomato | nucleus | 82.61 | 80.87 |
| CDY41581 | Canola | cytosol | 82.87 | 80.82 |
| AT3G53230.1 | Thale cress | cytosol | 83.5 | 80.74 |
| Bra029795.1-P | Field mustard | cytosol | 82.87 | 80.72 |
| TraesCS1B01G192400.1 | Wheat | cytosol | 82.74 | 80.69 |
| TraesCS1B01G235500.1 | Wheat | cytosol | 81.85 | 80.62 |
| CDX80862 | Canola | cytosol, plastid | 82.36 | 80.22 |
| KRH30601 | Soybean | cytosol | 81.98 | 80.15 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 81.85 | 79.83 |
| Bra006978.1-P | Field mustard | cytosol | 82.11 | 79.78 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 77.28 | 79.61 |
| CDX78154 | Canola | cytosol | 74.49 | 78.9 |
| CDX73571 | Canola | cytosol | 73.73 | 78.2 |
| KRH25081 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 71.32 | 77.62 |
| GSMUA_Achr3P00250_001 | Banana | cytosol | 18.65 | 75.0 |
| CDX67563 | Canola | cytosol | 81.73 | 73.27 |
| KRH45638 | Soybean | cytosol | 25.51 | 62.62 |
| Bra005733.1-P | Field mustard | cytosol | 82.87 | 59.15 |
| TraesCS2B01G373100.1 | Wheat | cytosol | 29.82 | 41.3 |
| TraesCS3B01G487900.1 | Wheat | mitochondrion | 32.23 | 34.09 |
| TraesCS7B01G280400.1 | Wheat | cytosol, unclear | 16.62 | 32.75 |
| TraesCS6B01G188500.1 | Wheat | cytosol | 16.5 | 32.5 |
| TraesCS7B01G060900.1 | Wheat | golgi | 17.51 | 32.39 |
| TraesCS7B01G468900.1 | Wheat | cytosol | 16.24 | 32.16 |
| TraesCS6B01G376500.1 | Wheat | golgi | 17.26 | 31.92 |
| TraesCS2B01G499600.1 | Wheat | cytosol | 16.5 | 31.18 |
| TraesCS2B01G100400.1 | Wheat | cytosol, plastid | 16.37 | 31.08 |
| TraesCS7B01G036400.1 | Wheat | cytosol | 15.99 | 29.51 |
| TraesCS3B01G457100.1 | Wheat | cytosol, golgi | 16.24 | 29.49 |
| TraesCS6B01G207100.1 | Wheat | cytosol | 15.36 | 28.95 |
| TraesCS2B01G494200.1 | Wheat | cytosol | 16.62 | 28.73 |
| TraesCS7B01G254400.1 | Wheat | cytosol | 15.23 | 28.37 |
| TraesCS2B01G493900.1 | Wheat | cytosol | 16.24 | 28.26 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 15.61 | 27.33 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 15.36 | 26.95 |
| TraesCS1B01G089700.1 | Wheat | cytosol, plastid | 32.23 | 25.89 |
| TraesCS4B01G108300.1 | Wheat | plastid | 32.61 | 25.7 |
| TraesCS2B01G480000.3 | Wheat | mitochondrion | 27.28 | 23.04 |
| TraesCS7B01G174800.1 | Wheat | cytosol | 22.59 | 17.28 |
| TraesCS5B01G299200.1 | Wheat | mitochondrion | 23.98 | 17.28 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.4.2.1 | Gene3D:2.40.40.20 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:AAA_ATPase_CDC48 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | InterPro:CDC48_domain_2-like_sf | InterPro:CDC4_N-term_subdom |
| InterPro:Cdc48_dom2 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02359 | PFAM:PF02933 | ScanProsite:PS00674 |
| PANTHER:PTHR23077 | PANTHER:PTHR23077:SF122 | SMART:SM00382 | SMART:SM01072 | SMART:SM01073 | SUPFAM:SSF50692 |
| SUPFAM:SSF52540 | SUPFAM:SSF54585 | TIGRFAMs:TIGR01243 | EnsemblPlantsGene:TraesCS3B01G171200 | EnsemblPlants:TraesCS3B01G171200.1 | TIGR:cd00009 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:172052250..172054616
Molecular Weight (calculated)
87099.4 Da
IEP (calculated)
5.302
GRAVY (calculated)
-0.296
Length
788 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAATSKKA ANRLVVEEAT TNDDNSVCNL HPDTMEKLSI YKGDIVLLKG KRRHNTVCMA LPDDTCEGHK LRINKVARSN LRVRIADVVS VHLCHDAKFG
101: KRVHILPLDD SVEGITGNLF DAYLKPYFVD AFRPVHKGDL FLVRGGMRSV EFKVMEIDPA ADYCVVAPDT EIFCEGEPVK REDEERLDDV GYDDVGGMGK
201: PLTLIRELVE LPLRHPQLFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SESNLRKAFE EAEKNAPSII FIDEIDSIAP
301: NREKTHGEVE RRIVSQLLTL MDGMKARAHV IVMGATNRPN SIDPALRRFG RFDREIDIGV PDEVGRLEVL RIHTKNMKLD KDVNLQVIAK DTHGYVGADL
401: AALCTEAALQ CMREKMDVID LEDDTIDAEI LNSMAVTNGH LKTALVGTNP SALRETVVEV PNVSWADIGG LDGVKRELQE TVQYPVEHPE KFEKFGMSRS
501: KGVLFYGPPG CGKTLLAKAI ANECQANFIS IKGPELLTMW FGESEANVRE IFDKARQSAP CVLFFDELDS IATQRGGRVG DAGGAADRVL NQLLTEMDGM
601: NAKKTVFIIG ATNRPDIIDS ALLRPGRLDQ LIYIPLPDEA SRHQIFKACL RKSPVAKDVD LGALARFTAG FSGADITEIC QRACKYAIRE DIEKDMERQR
701: MGKDTMEVDG GQEDEVAQIK AVHFEESMKY ARRSVSDADI RKYQAFAQTL QQSRGFGTEF RFPAQPHAAE AAVNTSATAD EDEDDLYK
101: KRVHILPLDD SVEGITGNLF DAYLKPYFVD AFRPVHKGDL FLVRGGMRSV EFKVMEIDPA ADYCVVAPDT EIFCEGEPVK REDEERLDDV GYDDVGGMGK
201: PLTLIRELVE LPLRHPQLFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SESNLRKAFE EAEKNAPSII FIDEIDSIAP
301: NREKTHGEVE RRIVSQLLTL MDGMKARAHV IVMGATNRPN SIDPALRRFG RFDREIDIGV PDEVGRLEVL RIHTKNMKLD KDVNLQVIAK DTHGYVGADL
401: AALCTEAALQ CMREKMDVID LEDDTIDAEI LNSMAVTNGH LKTALVGTNP SALRETVVEV PNVSWADIGG LDGVKRELQE TVQYPVEHPE KFEKFGMSRS
501: KGVLFYGPPG CGKTLLAKAI ANECQANFIS IKGPELLTMW FGESEANVRE IFDKARQSAP CVLFFDELDS IATQRGGRVG DAGGAADRVL NQLLTEMDGM
601: NAKKTVFIIG ATNRPDIIDS ALLRPGRLDQ LIYIPLPDEA SRHQIFKACL RKSPVAKDVD LGALARFTAG FSGADITEIC QRACKYAIRE DIEKDMERQR
701: MGKDTMEVDG GQEDEVAQIK AVHFEESMKY ARRSVSDADI RKYQAFAQTL QQSRGFGTEF RFPAQPHAAE AAVNTSATAD EDEDDLYK
001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
Arabidopsis Description
CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.