Factsheet for TraesCS4B01G268200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G267600.2	Wheat	cytosol	100.0	99.88
TraesCS4A01G035500.1	Wheat	golgi, nucleus	99.63	99.51
HORVU4Hr1G071960.2	Barley	cytosol	99.51	99.51
TraesCS4B01G268400.1	Wheat	golgi	98.04	98.52
EER92840	Sorghum	cytosol	95.1	95.93
Zm00001d014124_P001	Maize	cytosol, plasma membrane	95.1	95.81
EER94171	Sorghum	cytosol	94.86	95.68
Zm00001d032859_P006	Maize	plasma membrane	94.37	95.19
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	94.25	95.18
TraesCS1B01G235400.1	Wheat	cytosol	73.19	93.15
TraesCS1B01G192400.1	Wheat	cytosol	91.92	92.95
TraesCS1B01G235300.1	Wheat	cytosol	90.21	92.12
TraesCS1B01G235500.1	Wheat	cytosol	89.35	91.25
TraesCS3B01G154400.1	Wheat	cytosol	82.01	85.03
TraesCS1B01G419200.1	Wheat	cytosol	81.4	84.28
TraesCS3B01G171200.1	Wheat	cytosol	81.27	84.26
GSMUA_Achr3P00260_001	Banana	cytosol	50.06	83.81
TraesCS3B01G172000.1	Wheat	cytosol	80.42	83.8
TraesCS1B01G259200.1	Wheat	cytosol	80.91	83.78
TraesCS3B01G171400.1	Wheat	cytosol	74.54	83.77
TraesCS3B01G172100.1	Wheat	cytosol	80.91	83.67
TraesCS3B01G171300.1	Wheat	cytosol	72.7	81.48
TraesCS5B01G323100.1	Wheat	cytosol	57.65	81.07
TraesCS2B01G373100.1	Wheat	cytosol	28.27	40.6
TraesCS3B01G487900.1	Wheat	mitochondrion	30.84	33.83
TraesCS7B01G280400.1	Wheat	cytosol, unclear	16.52	33.75
TraesCS6B01G188500.1	Wheat	cytosol	16.4	33.5
TraesCS7B01G468900.1	Wheat	cytosol	16.16	33.17
TraesCS7B01G060900.1	Wheat	golgi	17.26	33.1
TraesCS6B01G376500.1	Wheat	golgi	17.26	33.1
TraesCS2B01G100400.1	Wheat	cytosol, plastid	15.79	31.08
TraesCS2B01G499600.1	Wheat	cytosol	15.79	30.94
TraesCS6B01G207100.1	Wheat	cytosol	15.18	29.67
TraesCS7B01G254400.1	Wheat	cytosol	15.18	29.31
TraesCS2B01G494200.1	Wheat	cytosol	16.28	29.17
TraesCS7B01G036400.1	Wheat	cytosol	15.18	29.04
TraesCS3B01G457100.1	Wheat	cytosol, golgi	15.42	29.03
TraesCS2B01G493900.1	Wheat	cytosol	15.79	28.48
TraesCS4B01G189200.1	Wheat	cytosol	15.54	28.22
TraesCS2B01G105700.1	Wheat	cytosol	15.3	27.84
TraesCS1B01G089700.1	Wheat	cytosol, plastid	32.44	27.01
TraesCS4B01G108300.1	Wheat	plastid	32.93	26.9
TraesCS2B01G480000.3	Wheat	mitochondrion	26.93	23.58
TraesCS7B01G174800.1	Wheat	cytosol	21.91	17.38
TraesCS5B01G299200.1	Wheat	mitochondrion	23.01	17.18

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	PFAM:PF09336
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	EnsemblPlantsGene:TraesCS4B01G268200	EnsemblPlants:TraesCS4B01G268200.1
InterPro:Vps4_C	TIGR:cd00009	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:-:541991962..541996166

Molecular Weight (calculated)

90715.1 Da

IEP (calculated)

4.885

GRAVY (calculated)

-0.389

Length

817 amino acids

Sequence
(BLAST)

001: MATPNPPPQQ DEPSSSADPK AKKDYSTAIL ERKKSPNRLV VDEATNDDNS VVALHPDTME RLQLFRGDTV LLKGKKRKDT ICIVLADDTC EEPKVRMNKT
101: VRKNLRVRLG DVVSVHQCPD VKYGKRVHIL PIDDTVEGIT GNLFDAFLKP YFLEAYRPLR KGDLFLVRGG MRSVEFKVIE TDPAEYCIVA PDTEIFCDGE
201: PVKREDEERL DDVGYDDVGG VRKQMAQIRE LVELPLRHPQ LFKSIGVKPP KGILLFGPPG SGKTLIARAV ANETGAFFFL INGPEIMSKL AGESESNLRK
301: AFEEAEKNAP SIIFIDEIDS IAPKREKTNG EVERRIVSQL LTLMDGLKSR AHVIVMGATN RPNSIDPALR RFGRFDREID IGVPDEVGRL EVLRIHTKNM
401: KLAEDVELEH ISRDTHGYVG ADLAALCTEA ALQCIREKMD IIDLEDETID AEILNSMAVT NDHFKTALTT SNPSALRETV VEVPNVSWED IGGLENVKRE
501: LQETVQYPVE HPEKFEKFGM SPSKGVLFYG PPGCGKTLLA KAIANECQAN FISIKGPELL TMWFGESEAN VREIFDKARG SAPCVLFFDE LDSIATQRGS
601: SVGDAGGAAD RVLNQLLTEM DGMNAKKTVF IIGATNRPDI IDPALLRPGR LDQLIYIPLP DVESRHQIFK ACLRKSPLAK DIDLSALAKY TQGFSGADIT
701: EICQRACKYA IRENIEKDIE RERRRKDNPE AMEEDEVDEV AEIRAAHFEE SMKYARRSVS DADIRKYQAF AQTLQQSRGF GSEFRFPDQP AAGAASAAAA
801: DPFASAAAAA EDDDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.