CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032859_P006	Maize	plasma membrane	99.51	99.51
Zm00001d014124_P001	Maize	cytosol, plasma membrane	99.38	99.26
EER92840	Sorghum	cytosol	96.54	96.54
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	96.17	96.29
TraesCS4D01G267800.1	Wheat	cytosol	95.31	94.96
TraesCS4B01G268200.1	Wheat	cytosol	95.68	94.86
HORVU4Hr1G071960.2	Barley	cytosol	95.68	94.86
TraesCS4D01G267600.2	Wheat	cytosol	95.68	94.74
HORVU4Hr1G072010.4	Barley	cytosol	95.31	94.72
TraesCS4B01G268400.1	Wheat	golgi	95.06	94.71
TraesCS4A01G035700.1	Wheat	plastid	94.94	94.59
TraesCS4A01G035500.1	Wheat	golgi, nucleus	95.31	94.38
HORVU0Hr1G038060.2	Barley	cytosol	60.37	92.44
TraesCS1B01G235400.1	Wheat	cytosol	72.35	91.28
TraesCS1D01G223800.1	Wheat	cytosol	90.0	91.12
TraesCS1B01G192400.1	Wheat	cytosol	90.86	91.09
TraesCS1A01G222100.1	Wheat	cytosol	89.63	90.75
HORVU1Hr1G049910.1	Barley	cytosol	91.11	90.66
TraesCS1B01G235300.1	Wheat	cytosol	89.51	90.62
HORVU1Hr1G060370.1	Barley	cytosol	90.0	90.33
TraesCSU01G001000.1	Wheat	cytosol	89.51	90.29
TraesCS1D01G253100.1	Wheat	cytosol	89.14	90.25
TraesCS1B01G235500.1	Wheat	cytosol	88.89	90.0
TraesCS1A01G190300.1	Wheat	cytosol	89.51	89.73
HORVU1Hr1G060340.2	Barley	cytosol	90.0	89.67
GSMUA_Achr3P00260_001	Banana	cytosol	51.48	85.45
EER95525	Sorghum	cytosol	80.99	84.1
KXG40206	Sorghum	cytosol	80.99	83.89
EES14976	Sorghum	cytosol	65.8	67.3
KXG26645	Sorghum	cytosol	27.28	38.91
EES06471	Sorghum	cytosol	16.67	33.75
EER87717	Sorghum	cytosol	31.98	33.42
EER88627	Sorghum	cytosol	16.3	33.17
EES01223	Sorghum	cytosol	17.28	32.86
EES07646	Sorghum	cytosol	17.28	32.86
KXG39890	Sorghum	cytosol	15.8	30.48
EER91182	Sorghum	cytosol	15.68	30.24
EES06492	Sorghum	cytosol	15.31	29.38
KXG31298	Sorghum	cytosol	15.43	29.21
EER87942	Sorghum	cytosol	15.43	29.07
EER88603	Sorghum	cytosol	14.94	28.88
EER99961	Sorghum	cytosol	15.93	28.86
EES09632	Sorghum	cytosol, plastid	33.46	27.43
EES12865	Sorghum	mitochondrion	27.53	24.03
EES15200	Sorghum	cytosol	24.32	18.01

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	EntrezGene:8073902
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	UniProt:C5X0G5
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	EnsemblPlants:EER94171	ProteinID:EER94171	ProteinID:EER94171.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	PFAM:PF09336	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073	EnsemblPlantsGene:SORBI_3001G236300
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	unigene:Sbi.3512	TIGRFAMs:TIGR01243	UniParc:UPI0001A83183
InterPro:Vps4_C	RefSeq:XP_002467173.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:23887013..23892890

Molecular Weight (calculated)

90018.3 Da

IEP (calculated)

4.829

GRAVY (calculated)

-0.383

Length

810 amino acids

Sequence
(BLAST)

001: MASQGEPSAS ASDPKEKKDY STAILERKKS PNRLVVDEAT NDDNSVVALH PDTMERLQLF RGDTVLLKGK KRKDTICIVL ADETCEEPKV RMNKVVRQNL
101: RVRLGDVVSV HQCQDVKYGK RVHILPIDDT VEGITGNLFD AFLKPYFLEA YRPLRKGDLF LVRGGMRSVE FKVIETDPAE YCIVAPDTEI FCDGEPIKRE
201: DEERLDEVGY DDVGGVRKQM AQIRELVELP LRHPQLFKSI GVKPPKGILL YGPPGSGKTL IARAVANETG AFFFLINGPE IMSKLAGESE SNLRKAFEEA
301: EKNAPSIIFI DEIDSIAPKR EKTNGEVERR IVSQLLTLMD GLKSRSHVIV MGATNRPNSI DPALRRFGRF DREIDIGVPD EVGRLEVLRI HTKNMKLAED
401: VNLELISKDT HGYVGADLAA LCTEAALQCI REKMDIIDLE DETIDAEILN SMAVTNDHFK TALGTSNPSA LRETVVEVPN VSWEDIGGLE NVKRELQETV
501: QYPVEHPEKF EKFGMSPSKG VLFYGPPGCG KTLLAKAIAN ECQANFISVK GPELLTMWFG ESEANVREIF DKARQSAPCV LFFDELDSIA TQRGSSVGDA
601: GGAADRVLNQ LLTEMDGMNA KKTVFIIGAT NRPDIIDPAL LRPGRLDQLI YIPLPDEQSR LQIFKACLRK SPVAKDVDLN ALAKYTQGFS GADITEICQR
701: ACKYAIRENI EKDIERERRR KDNPEAMEED EVDEIAEIKA AHFEESMKYA RRSVSDADIR KYQAFAQTLQ QSRGFGSEFR FSEQSATAGA AAADPFASAG
801: AAADDDDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.