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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 6
  • plastid 1
  • nucleus 1
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr11P... Banana cytosol 72.86 93.86
KXG39890 Sorghum cytosol 86.9 86.9
CDX88666 Canola cytosol 80.95 84.16
CDY43865 Canola cytosol 80.95 84.16
CDY58566 Canola cytosol 80.95 84.16
Bra002662.1-P Field mustard cytosol 80.71 83.91
Bra020378.1-P Field mustard cytosol 80.71 83.91
CDY02806 Canola cytosol 80.71 83.91
CDY32714 Canola cytosol 80.71 83.91
CDY32995 Canola cytosol, extracellular 80.71 83.91
Solyc06g082660.2.1 Tomato cytosol, nucleus 82.38 83.57
KRH30674 Soybean cytosol, nucleus 82.14 83.54
Bra006775.1-P Field mustard cytosol 77.62 83.38
Solyc06g082630.2.1 Tomato cytosol, plastid 82.14 83.33
AT5G58290.1 Thale cress cytosol 80.71 83.09
VIT_06s0004g08220.t01 Wine grape cytosol 82.62 83.01
KRG98107 Soybean cytosol 82.38 81.99
KRH30673 Soybean cytosol, nucleus 81.67 81.09
EER99961 Sorghum cytosol 45.24 42.51
EER88627 Sorghum cytosol 36.67 38.69
EES06471 Sorghum cytosol 36.67 38.5
EER88603 Sorghum cytosol 38.33 38.42
EES06492 Sorghum cytosol 38.33 38.15
EER87942 Sorghum cytosol 37.62 36.74
KXG31298 Sorghum cytosol 37.38 36.68
EES07646 Sorghum cytosol 36.43 35.92
EES01223 Sorghum cytosol 36.43 35.92
KXG26645 Sorghum cytosol 29.05 21.48
KXG40206 Sorghum cytosol 30.71 16.5
EER95525 Sorghum cytosol 30.48 16.41
EES14976 Sorghum cytosol 30.71 16.29
EER92840 Sorghum cytosol 30.48 15.8
EER94171 Sorghum cytosol 30.24 15.68
EER87717 Sorghum cytosol 28.33 15.35
EES12865 Sorghum mitochondrion 26.43 11.96
EES09632 Sorghum cytosol, plastid 26.67 11.34
EES15200 Sorghum cytosol 25.0 9.6
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.3Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300EntrezGene:8062221
InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreUniProt:C5WR90ncoils:CoilEnsemblPlants:EER91182
ProteinID:EER91182ProteinID:EER91182.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0005829GO:GO:0006139GO:GO:0006950GO:GO:0008150GO:GO:0008152
GO:GO:0008540GO:GO:0009056GO:GO:0009058GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0017025GO:GO:0019538GO:GO:0030163GO:GO:0030433GO:GO:0031595GO:GO:0031597
GO:GO:0036402GO:GO:0045899GO:GO:1901800InterPro:P-loop_NTPasePFAM:PF00004ScanProsite:PS00674
InterPro:PSMC4PANTHER:PTHR23073PANTHER:PTHR23073:SF8SMART:SM00382EnsemblPlantsGene:SORBI_3001G157800SUPFAM:SSF52540
unigene:Sbi.18646TIGRFAMs:TIGR01242UniParc:UPI0001A82120RefSeq:XP_002464184.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:+:12784396..12789912
Molecular Weight (calculated)
46670.9 Da
IEP (calculated)
6.454
GRAVY (calculated)
-0.297
Length
420 amino acids
Sequence
(BLAST)
001: MSATAVAPTP PAAAFAVAAP PSYPAAFSAA AAPTEGHDGD FYCHYKSLRR HHEFLEIQED YVKDELRNLR REELRGAEEV KRCRATPLEI GQFMEMVDAD
101: HGIVAPTTTG GSFYVRVLST IGRELLKPSA SVALHRHSHA LVDVLPPEAD SSISLLGSSE KPNVTYSDIG GCDIQKQEIR EAVELPLTHH ELYKQIGIDP
201: PRGVLLYGPP GTGKTMLAKA VAHHTTAAFI RVVGSEFVQK YLGEGPRMVR DVFRLAKENA PAIIFIDEVD AIATARFDAQ TGADREVQRI LMELLNQMDG
301: FDQTVNVKVI MATNRADTLD PALLRPGRLD RKIEFPLPDR RQKRLVFQVC TAKMNLSDEV DLEDYVCRPD KISAADIAAI CQEAGMHAVR KNRYVILPKD
401: FEKGYRTNVK KPETDFDFYK
Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)
001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK
Arabidopsis Description
RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.