CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88157
EES05555
EES15031
OQU89472

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05530.1	EER88157	AT1G59900.1	24846764
AT3G05530.1	EES05555	AT1G59900.1	24846764
AT3G05530.1	EES15031	AT3G25860.1	24846764
AT3G05530.1	OQU89472	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	99.77	99.77
KXG31298	Sorghum	cytosol	97.67	98.13
GSMUA_Achr5P04520_001	Banana	cytosol	90.93	96.54
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	85.81	96.09
VIT_14s0060g02260.t01	Wine grape	cytosol	90.23	95.8
VIT_05s0020g01180.t01	Wine grape	cytosol	93.72	95.27
TraesCS7B01G036400.1	Wheat	cytosol	93.95	94.61
KRG92899	Soybean	cytosol, nucleus	93.02	94.56
KRH33891	Soybean	endoplasmic reticulum, nucleus	92.79	94.33
Solyc01g099760.2.1	Tomato	nucleus, plastid	92.33	93.85
PGSC0003DMT400063574	Potato	cytosol	92.33	93.85
TraesCS7D01G134800.1	Wheat	cytosol	93.26	93.47
Bra001152.1-P	Field mustard	cytosol	91.86	93.16
CDX74142	Canola	cytosol	91.86	93.16
CDY40714	Canola	cytosol	91.86	93.16
TraesCS3B01G457100.1	Wheat	cytosol, golgi	93.95	93.09
TraesCS3A01G421900.1	Wheat	cytosol	93.95	93.09
AT3G05530.1	Thale cress	cytosol	91.63	92.92
Bra039431.1-P	Field mustard	cytosol	91.63	92.92
CDY05176	Canola	cytosol	91.63	92.92
CDY27761	Canola	cytosol	91.63	92.92
TraesCS3D01G417000.1	Wheat	cytosol	93.72	92.86
Bra040214.1-P	Field mustard	cytosol	91.4	92.69
CDY18782	Canola	cytosol	91.4	92.69
CDY18801	Canola	cytosol	91.4	92.69
KRH68501	Soybean	nucleus	87.67	88.71
KRG96790	Soybean	mitochondrion	64.42	83.43
EER99961	Sorghum	cytosol	42.09	40.49
EER88627	Sorghum	cytosol	37.44	40.45
EES06492	Sorghum	cytosol	39.07	39.81
EES06471	Sorghum	cytosol	36.98	39.75
EES07646	Sorghum	cytosol	39.3	39.67
EES01223	Sorghum	cytosol	39.3	39.67
EER88603	Sorghum	cytosol	38.6	39.62
KXG39890	Sorghum	cytosol	37.67	38.57
EER91182	Sorghum	cytosol	36.74	37.62
KXG26645	Sorghum	cytosol	28.84	21.83
EES14976	Sorghum	cytosol	29.77	16.16
EER95525	Sorghum	cytosol	29.07	16.03
KXG40206	Sorghum	cytosol	28.84	15.86
EER92840	Sorghum	cytosol	29.53	15.68
EER94171	Sorghum	cytosol	29.07	15.43
EER87717	Sorghum	cytosol	26.74	14.84
EES09632	Sorghum	cytosol, plastid	27.44	11.94
EES12865	Sorghum	mitochondrion	25.58	11.85
EES15200	Sorghum	cytosol	22.56	8.87

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	EntrezGene:8075532
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	UniProt:C5Z5B4	ncoils:Coil	EnsemblPlants:EER87942
ProteinID:EER87942	ProteinID:EER87942.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	SMART:SM00382	EnsemblPlantsGene:SORBI_3010G057900	SUPFAM:SSF52540
unigene:Sbi.3322	TIGRFAMs:TIGR01242	UniParc:UPI0001A8910D	RefSeq:XP_002436575.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:4562856..4567347

Molecular Weight (calculated)

47827.3 Da

IEP (calculated)

4.682

GRAVY (calculated)

-0.400

Length

430 amino acids

Sequence
(BLAST)

001: MSSSGAPAPA AAMAVDEAED DQLASMSTED IIRASRLLDN EIRVLKDELQ RTNLELESFK EKIKENQEKI KLNKQLPYLV GNIVEILEMN PEDEAEEDGA
101: NIDLDSQRKG KCVVLKTSTR QTIFLPVVGL VDPDKLKPGD LVGVNKDSYL ILDTLPSEYD SRVKAMEVDE KPTEDYNDIG GLEKQIQELV EAIVLPMTHK
201: DRFQKLGIRP PKGVLLYGPP GTGKTLMARA CAAQTNATFL KLAGPQLVQM FIGDGAKLVR DAFQLAKEKA PCIIFIDEID AIGTKRFDSE VSGDREVQRT
301: MLELLNQLDG FSSDERIKVI AATNRADILD PALMRSGRLD RKIEFPHPSE EARARILQIH SRKMNVNPDV NFEELARSTD DFNGAQLKAV CVEAGMLALR
401: RDATEVTHED FNEGIVQVQA KKKSSLNYYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.