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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX83563
CDY04184
CDY13593
CDY24500
CDY31596
CDY33613
CDY39183
CDY55064

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G05530.1 CDY24500 AT1G59900.1 24846764
AT3G05530.1 CDY31596 AT1G59900.1 24846764
AT3G05530.1 CDY33613 AT1G59900.1 24846764
AT3G05530.1 CDY55064 AT1G59900.1 24846764
AT3G05530.1 CDX83563 AT3G25860.1 24846764
AT3G05530.1 CDY04184 AT3G25860.1 24846764
AT3G05530.1 CDY13593 AT3G25860.1 24846764
AT3G05530.1 CDY39183 AT3G25860.1 24846764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001152.1-P Field mustard cytosol 100.0 100.0
CDX74142 Canola cytosol 100.0 100.0
CDY27761 Canola cytosol 99.76 99.76
AT3G05530.1 Thale cress cytosol 99.76 99.76
CDY05176 Canola cytosol 99.76 99.76
CDY18782 Canola cytosol 99.53 99.53
CDY18801 Canola cytosol 99.53 99.53
VIT_14s0060g02260.t01 Wine grape cytosol 92.22 96.54
Solyc01g099760.2.1 Tomato nucleus, plastid 94.81 95.04
PGSC0003DMT400063574 Potato cytosol 94.81 95.04
KRG92899 Soybean cytosol, nucleus 94.81 95.04
GSMUA_Achr9P13230_001 Banana cytosol 90.57 94.81
KRH33891 Soybean endoplasmic reticulum, nucleus 94.58 94.8
HORVU6Hr1G087650.1 Barley cytosol, plasma membrane 85.85 94.79
VIT_05s0020g01180.t01 Wine grape cytosol 94.34 94.56
GSMUA_Achr5P04520_001 Banana cytosol 89.62 93.83
Zm00001d037481_P003 Maize cytosol, extracellular, plasma membrane 93.4 92.09
Os06t0173100-01 Rice cytosol, nucleus, plasma membrane 93.16 92.07
EER87942 Sorghum cytosol 93.16 91.86
Os02t0803700-01 Rice cytosol, nucleus, plastid 92.69 91.61
KXG31298 Sorghum cytosol 92.45 91.59
Zm00001d045163_P001 Maize mitochondrion 37.97 91.48
KRH68501 Soybean nucleus 90.33 90.12
TraesCS3A01G421900.1 Wheat cytosol 92.22 90.09
TraesCS3B01G457100.1 Wheat cytosol, golgi 92.22 90.09
TraesCS3D01G417000.1 Wheat cytosol 91.98 89.86
TraesCS7B01G036400.1 Wheat cytosol 89.15 88.52
TraesCS7D01G134800.1 Wheat cytosol 88.44 87.41
Zm00001d018409_P007 Maize cytosol 90.09 85.27
KRG96790 Soybean mitochondrion 66.27 84.64
CDY20370 Canola cytosol 27.59 43.49
CDX70903 Canola cytosol 40.33 41.11
CDY39032 Canola cytosol 24.29 41.04
CDY35832 Canola cytosol 40.09 40.57
CDY06847 Canola cytosol 41.98 40.18
CDX92914 Canola cytosol, extracellular 41.75 39.95
CDY35245 Canola cytosol 41.75 39.95
CDY14224 Canola cytosol 41.75 39.78
CDX97472 Canola cytosol 41.75 39.78
CDX74842 Canola cytosol 38.44 39.56
CDY08201 Canola cytosol 32.78 39.15
CDY43865 Canola cytosol 37.26 39.11
CDY58566 Canola cytosol 37.26 39.11
CDY32995 Canola cytosol, extracellular 37.26 39.11
CDY32714 Canola cytosol 37.26 39.11
CDY02806 Canola cytosol 37.26 39.11
CDX88666 Canola cytosol 37.26 39.11
CDY25685 Canola cytosol 38.92 38.73
CDY30665 Canola cytosol 38.92 38.73
CDY24076 Canola cytosol 38.92 38.73
CDY02494 Canola cytosol 38.92 38.73
CDY36602 Canola cytosol 38.92 38.73
CDY20470 Canola cytosol, plasma membrane 38.92 38.73
CDX71534 Canola cytosol 36.08 38.35
CDY25226 Canola cytosol 36.08 38.35
CDY22373 Canola cytosol 36.08 38.35
CDY02428 Canola cytosol, extracellular 35.85 38.1
CDY59958 Canola cytosol 30.42 35.44
CDY30663 Canola cytosol 36.08 35.42
CDY39033 Canola cytosol 32.78 34.24
CDY20371 Canola cytosol, plastid 31.84 30.68
CDY25624 Canola cytosol 17.69 29.88
CDX88865 Canola cytosol, extracellular 39.62 26.71
CDY44958 Canola cytosol, plasma membrane 40.33 23.72
CDY42324 Canola cytosol, extracellular 40.09 23.71
CDY04161 Canola cytosol 26.89 18.91
CDY13308 Canola cytosol 30.42 15.93
CDY11249 Canola cytosol 29.72 15.79
CDY33111 Canola endoplasmic reticulum, plasma membrane, vacuole 26.65 15.78
CDX80862 Canola cytosol, plastid 29.48 15.45
CDX73996 Canola cytosol 29.01 15.2
CDY07941 Canola cytosol 29.01 15.2
CDY41316 Canola cytosol, extracellular 29.01 15.19
CDY22207 Canola cytosol 29.01 15.19
CDY54618 Canola cytosol 28.77 15.1
CDY41581 Canola cytosol 28.77 15.1
CDX74308 Canola mitochondrion 24.76 14.87
CDX67563 Canola cytosol 30.19 14.56
CDX78154 Canola cytosol 25.0 14.25
CDX73571 Canola cytosol 24.76 14.13
CDY23949 Canola cytosol 23.82 13.93
CDX89923 Canola cytosol 25.0 13.87
CDX84794 Canola cytosol 24.29 13.86
CDX91939 Canola cytosol, mitochondrion 24.53 13.38
CDY45794 Canola nucleus 24.53 13.05
CDX89698 Canola endoplasmic reticulum 20.75 12.66
CDY32490 Canola mitochondrion 26.89 12.3
CDY37450 Canola mitochondrion 26.65 12.22
CDX72118 Canola plastid 26.89 12.08
CDY56774 Canola plastid 27.36 11.39
CDY02982 Canola cytosol 27.36 9.84
CDY62119 Canola cytosol 23.82 9.25
CDX69950 Canola cytosol 23.35 9.07
CDY18139 Canola extracellular, vacuole 4.48 6.27
CDY69655 Canola cytosol, nucleus 0.47 0.88
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.5Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300GO:A0A078CBC4
UniProt:A0A078CBC4InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEnsemblPlants:CDY40714ProteinID:CDY40714
ProteinID:CDY40714.1ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016787GO:GO:0019538GO:GO:0030163
GO:GO:0036402GO:GO:1901800EnsemblPlantsGene:GSBRNA2T00071605001InterPro:P-loop_NTPasePFAM:PF00004ScanProsite:PS00674
InterPro:PSMC3PANTHER:PTHR23073PANTHER:PTHR23073:SF7SMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242
UniParc:UPI0001D62E50SEG:seg::::
Description
BnaC03g34300DBnaA03g29050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CBC4]
Coordinates
chrLK032477:+:280471..282859
Molecular Weight (calculated)
47494.8 Da
IEP (calculated)
4.651
GRAVY (calculated)
-0.429
Length
424 amino acids
Sequence
(BLAST)
001: MATPMVEDTS SFEEDQLASM STEDIIRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)
001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
Arabidopsis Description
RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.