Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19990.1 | CDX70900 | AT5G19960.1 | 21798944 |
| AT5G19990.1 | CDX88867 | AT5G19960.1 | 21798944 |
| AT5G19990.1 | CDY42320 | AT5G19960.1 | 21798944 |
| AT5G19990.1 | CDY44955 | AT5G19960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006529.1-P | Field mustard | cytosol | 99.52 | 98.81 |
| AT5G19990.1 | Thale cress | cytosol | 97.6 | 96.9 |
| CDY35832 | Canola | cytosol | 97.6 | 96.9 |
| AT5G20000.1 | Thale cress | cytosol | 96.39 | 95.7 |
| GSMUA_Achr7P09950_001 | Banana | cytosol | 90.62 | 93.55 |
| KRH44668 | Soybean | cytosol, mitochondrion, nucleus | 92.55 | 92.11 |
| VIT_09s0002g05800.t01 | Wine grape | cytosol | 92.31 | 92.09 |
| TraesCS6D01G166700.1 | Wheat | cytosol, golgi | 92.31 | 91.87 |
| TraesCS6B01G207100.1 | Wheat | cytosol | 92.31 | 91.87 |
| TraesCS6A01G177600.1 | Wheat | cytosol | 92.31 | 91.87 |
| KRH46990 | Soybean | nucleus | 92.31 | 91.87 |
| Zm00001d053616_P002 | Maize | cytosol | 92.79 | 91.47 |
| Solyc05g018590.2.1 | Tomato | nucleus | 91.59 | 91.37 |
| Zm00001d016439_P003 | Maize | cytosol, extracellular, plasma membrane | 92.55 | 91.23 |
| Os02t0205300-01 | Rice | cytosol | 92.79 | 91.04 |
| Solyc05g018570.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 91.11 | 90.89 |
| TraesCS7D01G350300.1 | Wheat | cytosol | 92.07 | 90.54 |
| TraesCS7B01G254400.1 | Wheat | cytosol | 92.07 | 90.54 |
| TraesCS7A01G372600.1 | Wheat | cytosol | 92.07 | 90.54 |
| HORVU7Hr1G084550.2 | Barley | cytosol | 92.07 | 90.54 |
| Os06t0600100-01 | Rice | plasma membrane | 87.5 | 86.05 |
| EER88603 | Sorghum | cytosol | 85.1 | 84.49 |
| HORVU6Hr1G036990.7 | Barley | cytosol | 92.31 | 83.12 |
| PGSC0003DMT400038718 | Potato | cytosol | 80.77 | 77.6 |
| CDX88865 | Canola | cytosol, extracellular | 95.43 | 63.12 |
| CDY42324 | Canola | cytosol, extracellular | 97.36 | 56.49 |
| CDY44958 | Canola | cytosol, plasma membrane | 97.6 | 56.31 |
| CDY20370 | Canola | cytosol | 30.77 | 47.58 |
| CDY39032 | Canola | cytosol | 28.61 | 47.41 |
| CDX74842 | Canola | cytosol | 44.95 | 45.39 |
| CDY25685 | Canola | cytosol | 45.91 | 44.84 |
| CDY02494 | Canola | cytosol | 45.91 | 44.84 |
| CDY36602 | Canola | cytosol | 45.91 | 44.84 |
| CDY30665 | Canola | cytosol | 45.91 | 44.84 |
| CDY24076 | Canola | cytosol | 45.91 | 44.84 |
| CDY20470 | Canola | cytosol, plasma membrane | 45.67 | 44.6 |
| CDY25226 | Canola | cytosol | 42.55 | 44.36 |
| CDY02428 | Canola | cytosol, extracellular | 42.31 | 44.11 |
| CDX71534 | Canola | cytosol | 42.31 | 44.11 |
| CDY22373 | Canola | cytosol | 42.31 | 44.11 |
| CDY08201 | Canola | cytosol | 35.82 | 41.97 |
| CDY39033 | Canola | cytosol | 39.9 | 40.89 |
| CDX74142 | Canola | cytosol | 41.11 | 40.33 |
| CDY40714 | Canola | cytosol | 41.11 | 40.33 |
| CDY27761 | Canola | cytosol | 41.11 | 40.33 |
| CDY18782 | Canola | cytosol | 41.11 | 40.33 |
| CDY18801 | Canola | cytosol | 41.11 | 40.33 |
| CDY05176 | Canola | cytosol | 41.11 | 40.33 |
| CDY43865 | Canola | cytosol | 38.94 | 40.1 |
| CDY02806 | Canola | cytosol | 38.94 | 40.1 |
| CDY32714 | Canola | cytosol | 38.94 | 40.1 |
| CDY32995 | Canola | cytosol, extracellular | 38.94 | 40.1 |
| CDX88666 | Canola | cytosol | 38.94 | 40.1 |
| CDY58566 | Canola | cytosol | 38.94 | 40.1 |
| CDY06847 | Canola | cytosol | 41.83 | 39.28 |
| CDY35245 | Canola | cytosol | 41.59 | 39.05 |
| CDX92914 | Canola | cytosol, extracellular | 41.59 | 39.05 |
| CDY14224 | Canola | cytosol | 41.59 | 38.88 |
| CDX97472 | Canola | cytosol | 41.59 | 38.88 |
| CDY30663 | Canola | cytosol | 39.42 | 37.96 |
| CDY20371 | Canola | cytosol, plastid | 39.42 | 37.27 |
| CDY59958 | Canola | cytosol | 31.97 | 36.54 |
| CDY25624 | Canola | cytosol | 20.91 | 34.66 |
| CDY04161 | Canola | cytosol | 26.68 | 18.41 |
| CDX74308 | Canola | mitochondrion | 26.92 | 15.86 |
| CDY33111 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.44 | 15.36 |
| CDX73996 | Canola | cytosol | 29.57 | 15.2 |
| CDY07941 | Canola | cytosol | 29.57 | 15.2 |
| CDY41316 | Canola | cytosol, extracellular | 29.57 | 15.19 |
| CDY22207 | Canola | cytosol | 29.57 | 15.19 |
| CDY54618 | Canola | cytosol | 29.33 | 15.1 |
| CDY41581 | Canola | cytosol | 29.33 | 15.1 |
| CDY11249 | Canola | cytosol | 28.85 | 15.04 |
| CDX80862 | Canola | cytosol, plastid | 29.09 | 14.96 |
| CDX84794 | Canola | cytosol | 26.68 | 14.94 |
| CDY13308 | Canola | cytosol | 29.09 | 14.94 |
| CDY23949 | Canola | cytosol | 25.96 | 14.9 |
| CDX91939 | Canola | cytosol, mitochondrion | 27.16 | 14.54 |
| CDY45794 | Canola | nucleus | 27.64 | 14.43 |
| CDX89923 | Canola | cytosol | 25.96 | 14.14 |
| CDX67563 | Canola | cytosol | 29.09 | 13.77 |
| CDX78154 | Canola | cytosol | 23.56 | 13.17 |
| CDX73571 | Canola | cytosol | 23.32 | 13.06 |
| CDX72118 | Canola | plastid | 28.85 | 12.71 |
| CDX89698 | Canola | endoplasmic reticulum | 21.15 | 12.66 |
| CDY37450 | Canola | mitochondrion | 27.88 | 12.54 |
| CDY32490 | Canola | mitochondrion | 27.88 | 12.51 |
| CDY56774 | Canola | plastid | 29.33 | 11.98 |
| CDX69950 | Canola | cytosol | 27.4 | 10.44 |
| CDY62119 | Canola | cytosol | 26.92 | 10.26 |
| CDY02982 | Canola | cytosol | 26.92 | 9.5 |
| CDY18139 | Canola | extracellular, vacuole | 3.37 | 4.62 |
| Os06t0600301-00 | Rice | plasma membrane | 1.68 | 3.1 |
| CDY69655 | Canola | cytosol, nucleus | 0.48 | 0.88 |
| Bra006530.1-P | Field mustard | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.6 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | GO:A0A078C783 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlants:CDX70903 | ProteinID:CDX70903 | ProteinID:CDX70903.1 |
| ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 | EnsemblPlantsGene:GSBRNA2T00140810001 | InterPro:P-loop_NTPase |
| PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF57 | SMART:SM00382 | SUPFAM:SSF52540 |
| TIGRFAMs:TIGR01242 | UniParc:UPI0001D62E55 | SEG:seg | : | : | : |
Description
BnaC03g09870D26S protease regulatory subunit 8 homolog B [Source:Projected from Arabidopsis thaliana (AT5G20000) UniProtKB/Swiss-Prot;Acc:Q94BQ2]
Coordinates
chrLK031791:+:2649147..2651843
Molecular Weight (calculated)
46869.3 Da
IEP (calculated)
8.810
GRAVY (calculated)
-0.376
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVGIETRR PEGAMEETCN VKGAQGEGLK QYYLQHIDEL QRLLRQKTNN LNRLEAQRND LNSRVRMLRE ELQLLQEPGS YVGEVVKVMG KNKVLVKVHP
101: EGKYVVDIDK SIDITKLTPS TRVALRNDSY VLHLVLPSKV DPLVNLMKVE KVPDSTYDMI GGLDQQIKEI KEVIELPIKH PELFESLGIA QPKGVLLYGP
201: PGTGKTLLAR AVAHHTDCTF IRVSGSELVQ KYIGEGSRMV RELFVMAREH APSIIFMDEI DSIGSARMES GSGNGDSEVQ RTMLELLNQL DGFEASNKIK
301: VLMATNRIDI LDQALLRPGR IDRKIEFPNP NEDSRCDILK IHSRKMNLMR GIDLKKIAEK MNGASGAELK AVCTEAGMFA LRERRVHVTQ EDFEMAVAKV
401: MKKDTEKNMS LRKLWK
101: EGKYVVDIDK SIDITKLTPS TRVALRNDSY VLHLVLPSKV DPLVNLMKVE KVPDSTYDMI GGLDQQIKEI KEVIELPIKH PELFESLGIA QPKGVLLYGP
201: PGTGKTLLAR AVAHHTDCTF IRVSGSELVQ KYIGEGSRMV RELFVMAREH APSIIFMDEI DSIGSARMES GSGNGDSEVQ RTMLELLNQL DGFEASNKIK
301: VLMATNRIDI LDQALLRPGR IDRKIEFPNP NEDSRCDILK IHSRKMNLMR GIDLKKIAEK MNGASGAELK AVCTEAGMFA LRERRVHVTQ EDFEMAVAKV
401: MKKDTEKNMS LRKLWK
001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
Arabidopsis Description
RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.