Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42320 | Canola | nucleus | 70.28 | 70.28 |
| CDY44955 | Canola | nucleus | 69.35 | 69.35 |
| AT5G19960.1 | Thale cress | cytosol | 61.3 | 58.75 |
| CDX88867 | Canola | nucleus | 53.87 | 40.09 |
| GSMUA_Achr7P08450_001 | Banana | nucleus | 41.18 | 36.74 |
| VIT_11s0016g04610.t01 | Wine grape | nucleus | 37.46 | 34.87 |
| KXG29764 | Sorghum | nucleus | 34.98 | 34.35 |
| Zm00001d016410_P006 | Maize | nucleus | 34.37 | 33.74 |
| KRH56658 | Soybean | nucleus | 37.46 | 33.15 |
| Zm00001d053613_P001 | Maize | nucleus | 33.13 | 32.82 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 39.01 | 31.98 |
| KRH03775 | Soybean | nucleus | 35.6 | 31.51 |
| TraesCS6A01G178400.1 | Wheat | nucleus | 33.44 | 30.95 |
| TraesCS6D01G166200.2 | Wheat | nucleus | 33.13 | 30.48 |
| TraesCS6B01G205800.2 | Wheat | nucleus | 32.82 | 30.2 |
| HORVU6Hr1G036810.5 | Barley | nucleus | 31.27 | 28.13 |
| CDX99063 | Canola | nucleus | 17.34 | 19.11 |
| CDX86130 | Canola | nucleus | 16.1 | 17.33 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | GO:A0A078C1Y1 | EnsemblPlants:CDX70900 | ProteinID:CDX70900 | ProteinID:CDX70900.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00140804001 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44202 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI0004EAFF8C |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g09840D
Coordinates
chrLK031791:+:2633058..2635386
Molecular Weight (calculated)
36830.5 Da
IEP (calculated)
5.596
GRAVY (calculated)
-1.080
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMEDANSVY VGGLPYDVTE EALRRVFSTY GTVVDIKIVN DRSVRGKCYG FVTFSNRRSA DDAIQDMDGK IIGGRAVRVN EVTTRFGGQG RFQPQSPSDG
101: RSDFGYERDR FSDRSRERDR SQDRRRAYER SHGFEGRNDH GMLDRDGYKE RGFEEGDWRG DRSFEDNGRG VHRASSDEET KREDSTMLDG GRGRDGKDHF
201: SNSSGDRSFQ VKEELEALIK THDVLQDEVL VMEERLEVKE VLCSELEKKS KRLEDLLSNE KKLTSQRRKE LAKLHKSYSK VRECGDNLKG CEQELQSLVN
301: SAAREGVAGA DEGLENGYVQ YKV
101: RSDFGYERDR FSDRSRERDR SQDRRRAYER SHGFEGRNDH GMLDRDGYKE RGFEEGDWRG DRSFEDNGRG VHRASSDEET KREDSTMLDG GRGRDGKDHF
201: SNSSGDRSFQ VKEELEALIK THDVLQDEVL VMEERLEVKE VLCSELEKKS KRLEDLLSNE KKLTSQRRKE LAKLHKSYSK VRECGDNLKG CEQELQSLVN
301: SAAREGVAGA DEGLENGYVQ YKV
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Arabidopsis Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.