CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67590
CDX67592
CDX68463
CDX72151
CDX73501
CDX74700
CDX77460
CDX78214
CDX85167
CDX90003
CDX90038
CDX90458
CDX90483
CDX92969
CDX92996
CDX94841
CDX94878
CDY07554
CDY09609
CDY09638
CDY15172
CDY15206
CDY18083
CDY18962
CDY27228
CDY27400
CDY32448
CDY32958
CDY35484
CDY35590
CDY37020
CDY40829
CDY42967
CDY43605
CDY51583
CDY55328
CDY58544
CDY60454
CDY64587
CDY70544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	CDX90003	AT1G01050.1	21798944
AT5G65683.1	CDY15206	AT1G01050.1	21798944
AT5G65683.1	CDY32448	AT1G01050.1	21798944
AT5G65683.1	CDY55328	AT1G01050.1	21798944
AT5G65683.1	CDX90038	AT1G01510.1	21798944
AT5G65683.1	CDY15172	AT1G01510.1	21798944
AT5G65683.1	CDX74700	AT2G44950.1	21798944
AT5G65683.1	CDY18962	AT2G44950.1	21798944
AT5G65683.1	CDY27400	AT2G44950.1	21798944
AT5G65683.1	CDY37020	AT2G44950.1	21798944
AT5G65683.1	CDY58544	AT3G03000.1	21798944
AT5G65683.1	CDX92969	AT3G22960.1	21798944
AT5G65683.1	CDX94878	AT3G22960.1	21798944
AT5G65683.1	CDY35484	AT3G22960.1	21798944
AT5G65683.1	CDY40829	AT3G22960.1	21798944
AT5G65683.1	CDX77460	AT3G24140.1	21798944
AT5G65683.1	CDX85167	AT3G24140.1	21798944
AT5G65683.1	CDX92996	AT3G24140.1	21798944
AT5G65683.1	CDX94841	AT3G24140.1	21798944
AT5G65683.1	CDY18083	AT3G24140.1	21798944
AT5G65683.1	CDY64587	AT3G24140.1	21798944
AT5G65683.1	CDX68463	AT3G48550.1	21798944
AT5G65683.1	CDY60454	AT3G48550.1	21798944
AT5G65683.1	CDY70544	AT3G48550.1	21798944
AT5G65683.1	CDX67590	AT3G54170.1	21798944
AT5G65683.1	CDX67592	AT3G54170.1	21798944
AT5G65683.1	CDX73501	AT3G54170.1	21798944
AT5G65683.1	CDX78214	AT3G54170.1	21798944
AT5G65683.1	CDY07554	AT3G54170.1	21798944
AT5G65683.1	CDY51583	AT3G54170.1	21798944
AT5G65683.1	CDX72151	AT3G56270.1	21798944
AT5G65683.1	CDY27228	AT3G56270.1	21798944
AT5G65683.1	CDX90483	AT4G17220.1	21798944
AT5G65683.1	CDY09638	AT4G17220.1	21798944
AT5G65683.1	CDY35590	AT4G17220.1	21798944
AT5G65683.1	CDY42967	AT4G17220.1	21798944
AT5G65683.1	CDX90458	AT4G17680.1	21798944
AT5G65683.1	CDY09609	AT4G17680.1	21798944
AT5G65683.1	CDY32958	AT5G43280.1	21798944
AT5G65683.1	CDY43605	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37838	Canola	plastid	66.06	93.8
CDY08765	Canola	plastid	80.56	80.79
CDY45614	Canola	plastid	80.99	80.76
AT5G65683.1	Thale cress	peroxisome, plastid	78.87	78.1
VIT_07s0205g00030.t01	Wine grape	nucleus	45.35	49.09
CDY25618	Canola	nucleus, peroxisome, plastid	44.65	47.89
CDX89500	Canola	cytosol, peroxisome, plastid	44.93	47.4
KRH74431	Soybean	mitochondrion	45.21	47.21
KRH39527	Soybean	extracellular, golgi	35.49	46.58
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	44.79	46.42
KRH45468	Soybean	cytosol, peroxisome	26.2	46.15
PGSC0003DMT400078676	Potato	plastid	45.35	45.29
CDY31616	Canola	nucleus	43.8	45.27
Solyc02g091710.2.1	Tomato	plastid	45.77	45.26
KRH75634	Soybean	nucleus	37.75	41.36
CDY28148	Canola	plastid	36.76	38.44
CDY45010	Canola	mitochondrion, peroxisome	38.03	37.09
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	35.92	37.01
GSMUA_Achr5P14740_001	Banana	mitochondrion	35.07	35.98
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	37.04	35.93
Zm00001d024940_P001	Maize	peroxisome	36.48	35.14
GSMUA_Achr7P01890_001	Banana	mitochondrion	35.21	35.01
TraesCS2A01G045100.1	Wheat	peroxisome	37.18	34.74
GSMUA_Achr4P22090_001	Banana	nucleus	34.51	34.27
TraesCS2D01G043700.1	Wheat	peroxisome	36.62	34.08
TraesCS2B01G057300.1	Wheat	peroxisome	36.9	34.03
Zm00001d004553_P001	Maize	peroxisome	35.92	34.0
OQU81040	Sorghum	peroxisome	32.11	31.89
KRH45469	Soybean	nucleus	7.75	31.07
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	21.69	28.57
CDY67781	Canola	cytosol	20.85	27.98
CDY31517	Canola	extracellular, mitochondrion, plastid	22.25	26.42
CDY52708	Canola	extracellular, mitochondrion, plastid	21.97	25.91
CDY32819	Canola	cytosol	21.69	25.5
CDX74871	Canola	mitochondrion	20.7	24.1
CDX91506	Canola	mitochondrion	20.56	24.01
CDX93597	Canola	cytosol	21.55	23.79
CDX95099	Canola	cytosol	18.45	23.31
CDY17702	Canola	mitochondrion	12.39	22.86
CDX77800	Canola	nucleus	16.34	20.42
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	0.28	0.52

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:A0A078INA9	UniProt:A0A078INA9	EnsemblPlants:CDY52535
ProteinID:CDY52535	ProteinID:CDY52535.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00007234001	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF00092	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579
PANTHER:PTHR10579:SF59	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EECEE3
InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

BnaC02g43940DBnaC02g43940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INA9]

Coordinates

chrLK033101:+:37607..40270

Molecular Weight (calculated)

77271.1 Da

IEP (calculated)

10.198

GRAVY (calculated)

-0.341

Length

710 amino acids

Sequence
(BLAST)

001: MVFGWRKAFC TSFPSNQDKS HQSSSDLLHT DPPIPTPRLR SKFGFFSNPS TPRLRSRGGG GGSGCRSAAS TAAATPSLPT SPRLQCRTTS NATPRTSNPS
101: TPKFLSNPSS PKSSSPSSHA GVSLLRATLL LNQSNSNRCG ICLQRVHSDQ INSTAIFTAE CSHSFHLSCA VRLQDKRCPF CSTAWSHAPR KDPPSANFGS
201: DPIRKPGIRE IKTGKSLRVY NDDEPLAYSP VSLARFNTIL ESDENDDVEE DDEFPGFFPD SSITPAASIS GNLEVQLLPE SAVVETGKKI ETHVAVMKVK
301: ASPMKDAVRA RRPSIDLVAV LDLSGGGANL QTVKHAMRLV ISLLREMDRL SIVVFSTGSK RLMPLRRMTA RGRGSARRIV DSLGGVEATG GGGMSVSDAL
401: KKAVKVVEDR RERNPTASVL VLSDGQDQPE AVLKARLSSK RVPFVVSTTR LSRPMIPVHS VWIASPSALQ YAPLRDAFTE RVAALFNVVL HDVKLNLGLV
501: SASPLTEISA VYSLTGRPES FGSGSAVVVG DLFAEEEREY LVEFKLKVPT SSSGSHRVMS VRSSVVDPAT LQPFPCPNEK RFLIPRPQTV RFVSASIERL
601: RNRHSVCRAV AESRKMIERE DLAGAYEVLT AARSNALDEN DSLKSLDAEL AELNRLKPRD GTANRAEEEK TEQLTPTSAW RAAEKLAKVA IMRKHLNRVS
701: DMHGLENARF

Best Arabidopsis Sequence Match ( AT5G65683.1 )
(BLAST)

001: MVFGWRKAFC TSVSSNQDKP QQHSSLHTTD PPIPTPRFRS KFGFLSNPST PRLRSRGGSG TGCRSSASTS VTIPSLPTSP KLHCRTTSNA TPRTSNSSSP
101: KFFSNPSSPK SSSSSSSQGG GGVSLLRATL LLNKSNSSRC AICLQRVNSN QSNSTAAIFT AECSHSFHLS CVNGLEDKRC PFCSAAWNHA PKSNYPAVNN
201: NFGSDPIRRP EIREIKTGKS LRVYNDDEPL AYSPVSLAQI NTIHESDEND DVEDDDDFPG FFRDSSITSD MVPSISGNLE VKLLPESAVV ETGKKKETHV
301: VIMKLKASPS PSSITDAIKA RRPSIDLVTV LDLSNGGANL QTVKHAMRSV ISLLREMDRL SIVVFSTGSK RLMPLRRMTA KGRRSARRMV DALGGMETTG
401: GVGMSVNDAL KKAVKVVEDR REKNPSTSIF VLSDGQDQPE AVLKAKLNAT RIPFVVSTTR FSRPEIPVHS VYIASPGALL HAPLRDAFTE RIASLLNVTL
501: HNVKLNLSLV NGSHLTEISS VYSLTGRLEN FGSGSVIQVG DLFAEEEREF LVELKVPTSS SGSHQVMSVQ SSIVDQMTHQ PMTCPKEKRF LIPRPQSVRY
601: VSSSIERLRN LHSMCRAVAD SRRLIEREDL SGAYQVLTTA RSNASHSDDS LRSLEVELNE LSRIKPRNSI LNRTEDKPEQ LTPTSAWRAA EKLAKVAIMR
701: KHLNRVSDMH GLENARF

Arabidopsis Description

WAVH2Probable E3 ubiquitin-protein ligase WAVH2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX9]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.