CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum, vacuole, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
golgi 2
plasma membrane 1
vacuole 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93597	Canola	cytosol	4.92	2.95
CDX95099	Canola	cytosol	2.85	1.96
CDY32819	Canola	cytosol	2.59	1.66
CDX91506	Canola	mitochondrion	2.59	1.64
CDX74871	Canola	mitochondrion	2.59	1.64
CDY52708	Canola	extracellular, mitochondrion, plastid	1.81	1.16
CDY31517	Canola	extracellular, mitochondrion, plastid	1.55	1.0
CDX77800	Canola	nucleus	1.04	0.7
Solyc02g032430.1.1	Tomato	plasma membrane	0.26	0.6
Solyc02g032340.1.1	Tomato	mitochondrion	0.26	0.6
PGSC0003DMT400091492	Potato	nucleus	0.26	0.59
CDY25618	Canola	nucleus, peroxisome, plastid	0.52	0.3
CDX89500	Canola	cytosol, peroxisome, plastid	0.52	0.3
CDY28148	Canola	plastid	0.52	0.29
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	0.52	0.29
CDY31616	Canola	nucleus	0.52	0.29
CDY08765	Canola	plastid	0.52	0.28
CDY52535	Canola	plastid	0.52	0.28
CDY45614	Canola	plastid	0.52	0.28
CDY45010	Canola	mitochondrion, peroxisome	0.52	0.27
PGSC0003DMT400085780	Potato	nucleus	0.26	0.26
VIT_15s0024g01790.t01	Wine grape	nucleus	0.0	0.0
Solyc02g032370.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
VIT_19s0135g00160.t01	Wine grape	nucleus	0.0	0.0
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	0.0	0.0
CDY67781	Canola	cytosol	0.0	0.0
CDY37838	Canola	plastid	0.0	0.0
CDY17702	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDX93598	EnsemblPlantsGene:GSBRNA2T00156278001	GO:A0A078E275	InterPro:DUF707	PANTHER:PTHR31210	PANTHER:PTHR31210:SF30
PFAM:PF05212	ProteinID:CDX93598	ProteinID:CDX93598.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE7EAB
MapMan:35.2	:	:	:	:	:

Description

BnaA06g04500D

Coordinates

chrLK031876:+:883492..886734

Molecular Weight (calculated)

44337.7 Da

IEP (calculated)

7.679

GRAVY (calculated)

-0.505

Length

386 amino acids

Sequence
(BLAST)

001: MGIFHRSGAP RRTNENAKLI ITTIVAMVFG FFIGITLPSV SFTKINLPSG FISSLDGGRS PEDFGSRQFP KIYVPTNPHG AELLPPGIIV AESDFYLRRL
101: WGEPSEDLKK KPKYLVTFTV GFEQRNNINA AVKKFSEDFQ ILLFHYDGRT TEWDQFEWSK NAIHISAKKQ TKWWYAKRFL HPDVVSAYEY IFIWDEDLGV
201: EHFNAERYIE LVKKHGLEIS QPGLEPNNGL TWEMTKRRGD RDVHKETQEK PGWCSDPHLP PCAAFVEIMA PVFSREAWRC VWHMIQNDLV HGWGLDFALR
301: RCVEPAHEKI GVVDSQWIIH QVIPSLGSQG ESEKGKTPWQ GVRERCRNEW TLFQNRVAEA DKEYMEQQKG NAQKSGMSKP SPGSSI

Best Arabidopsis Sequence Match ( AT1G08040.1 )
(BLAST)

001: MGTMHRSGAP RRTNENAKLI ITTIVGVVFG FFVGITLPLG SFRKISLPSG LMSSLDVAMS DGKLFSGGRS PEDIGSRKSP KIYVPTNPHG AELLPPGIIV
101: AETDFYLRRL WGEPSEDLKK KPKYLVTFTV GFEQRNNINA AVKKFSEDFQ ILLFHYDGRT TEWDQFEWSK NAIHISAKKQ TKWWYAKRFL HPDVVSAYEY
201: IFIWDEDLGV EHFNADRYVE LVKKHGLEIS QPGLEPNNGL TWEMTKRRGD RDVHKETKEK PGWCSDPHLP PCAAFVEIMA PVFSREAWRC VWHMIQNDLV
301: HGWGLDFALR RCVEPAHEKI GVVDSQWIIH QVIPSLGSQG ESEEGKSPWQ GVRERCRNEW TMFQNRVAEA DKAYMEQHKV KE

Arabidopsis Description

Putative storage protein [Source:UniProtKB/TrEMBL;Acc:Q93ZR2]
SUBAcon: [cytosol,golgi,endoplasmic reticulum,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.